PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA10G0133700.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GATA

Protein Properties

Length: 389aa MW: 39893.1 Da PI: 7.7884

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA10G0133700.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.7	6.5e-18	280	315	1	36
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 C++C + kTp+WR gp g+ktLCnaCG+++++ +l+ ORGLA10G0133700.1 280 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLM 315 ********************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	11.253	274	310	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.3E-16	274	324	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.09E-13	278	338	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.6E-13	278	312	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.11E-13	279	326	No hit	No description
Pfam	PF00320	1.4E-15	280	315	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	280	305	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009416	Biological Process	response to light stimulus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MASEWEMAMG VDLGMGMSTY HNASGGIAAA PMMGHHGGGG GGGGYSAAHH HHHHYYGMPH 60 QAAMGDAMRV DDLLDLSNTP GAHDFFPASA AAAAAGDHGH HHHHHHHIGG MGEPSGATPS 120 ATSSDHQTSM LSFADDFYIP TEDAAELEWL SKFVDDSYSD MPNYQSSAHA AMAAAAASAA 180 NNGGGSSAGQ DSCLTAAPGR GARSKRSRAT AAAAAAWHSL VPRPPSQSSP SSSCSSSDFP 240 SSNKPSGAAR PNGSGGGSRG KKSPGPAGVE VGMEAGVRRC THCASEKTPQ WRTGPLGPKT 300 LCNACGVRFK SGRLMPEYRP AASPTFVLTQ HSNSHRKVME LRRQKELLII RGSHRDAAAA 360 AAAAAAAAAA GSAAATGRPE LMFRDYGVC

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MASEWEMAMG VDLGMGMSTY HNASGGIAAA PMMGHHGGGG GGGGYSAAHH HHHHYYGMPH  60
QAAMGDAMRV DDLLDLSNTP GAHDFFPASA AAAAAGDHGH HHHHHHHIGG MGEPSGATPS  120
ATSSDHQTSM LSFADDFYIP TEDAAELEWL SKFVDDSYSD MPNYQSSAHA AMAAAAASAA  180
NNGGGSSAGQ DSCLTAAPGR GARSKRSRAT AAAAAAWHSL VPRPPSQSSP SSSCSSSDFP  240
SSNKPSGAAR PNGSGGGSRG KKSPGPAGVE VGMEAGVRRC THCASEKTPQ WRTGPLGPKT  300
LCNACGVRFK SGRLMPEYRP AASPTFVLTQ HSNSHRKVME LRRQKELLII RGSHRDAAAA  360
AAAAAAAAAA GSAAATGRPE LMFRDYGVC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269\|PubMed:12139008}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA10G0133700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC069300	0.0	AC069300.7 Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence.
GenBank	AK242292	0.0	AK242292.1 Oryza sativa Japonica Group cDNA, clone: J075191F19, full insert sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613303.1	0.0	GATA transcription factor 2
Swissprot	O49741	1e-60	GATA2_ARATH; GATA transcription factor 2
TrEMBL	I1QVV4	0.0	I1QVV4_ORYGL; GATA transcription factor
STRING	ORGLA10G0133700.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4621	29	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45050.1	2e-45	GATA transcription factor 2

Publications ? help Back to Top
Jiang K,Yung V,Chiba T,Feldman LJ Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain. Planta, 2018. 247(4): p. 831-843 [PMID:29249045]