PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0013300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 543aa    MW: 58038.9 Da    PI: 6.3096
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0013300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2431.3e-742905102232
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilk 92 
                         +lLl+cAe v++++l +a+++L ++ ela+p g+++qR+aayf+eA++arl++s+ +ly+ l +ps+++ + + +++aa+++f+ +sP++k
  ORGLA11G0013300.1 290 LTLLLQCAESVNADNLDEAHRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLpNPSPAAARLHGRVAAAFQVFNGISPFVK 381
                        579************************************************************777777777799999************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                        fsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g+    s e+le+tg+rL++fA++lg+pfef + va+
  ORGLA11G0013300.1 382 FSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMEALEATGKRLSDFADTLGLPFEFCP-VAD 468
                        *********************************************************....***************************.7** PP

               GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvk 232
                        +  +l++e+L v ++Ea+aV++    h+l+d ++s ++    +L+l++
  ORGLA11G0013300.1 469 KAGNLDPEKLGVTRREAVAVHWLR--HSLYDVTGSDSN----TLWLIQ 510
                        **********************98..888888888777....666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.345263543IPR005202Transcription factor GRAS
PfamPF035144.4E-72290510IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MGSSSLLLFP SSSSSATHSS YSPSSHAITS LLPPLPSDHH LLLYLDHQEQ HHLAAAMVRK  60
RPASDMDLPP PRRHVTGDLS DVTAAAAPSS ASAQLPALPT QLPAFHHTDM DLAAPAPPPP  120
QQQVAAGEGG PPSTAWVDGI IRDIIASSGA AVSVAQLIHN VREIIRPCNP DLASILELRL  180
RSLLTSDPAP PPPPPPSHPA LLPPDATAPP PPPTSVAALP PPPPPQPDKR RREPQCQEQE  240
PNQPQSPKPP TAEETAAAAA AAAAAALAAA KERKEEQRRK QRDEEGLHLL TLLLQCAESV  300
NADNLDEAHR ALLEIAELAT PFGTSTQRVA AYFAEAMSAR LVSSCLGLYA PLPNPSPAAA  360
RLHGRVAAAF QVFNGISPFV KFSHFTANQA IQEAFEREER VHIIDLDIMQ GLQWPGLFHI  420
LASRPGGPPR VRLTGLGASM EALEATGKRL SDFADTLGLP FEFCPVADKA GNLDPEKLGV  480
TRREAVAVHW LRHSLYDVTG SDSNTLWLIQ RYYTFLLSSL VNSGPPGIMA TLHPIFPIDI  540
VTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1262735113240Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0013300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620600.10.0protein SCARECROW 2
SwissprotA2ZAX50.0SCR1_ORYSI; Protein SCARECROW 1
TrEMBLI1QX910.0I1QX91_ORYGL; Uncharacterized protein
STRINGORGLA11G0013300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-114GRAS family protein