PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0014100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 84aa    MW: 9455.93 Da    PI: 4.5847
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0014100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM514.8e-161967150
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkk 50
                       lppGfrFhPtd e++  yL +k  + +++    i evd++k+ePwdLp+k
  ORGLA11G0014100.1 19 LPPGFRFHPTDAEVILSYLLQKFLNPSFTS-LPIGEVDLNKCEPWDLPSK 67
                       79*************************888.56**************943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-161568IPR003441NAC domain
PROSITE profilePS5100516.9321984IPR003441NAC domain
PfamPF023653.8E-62062IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MVETSTSLVK LEQDGSLFLP PGFRFHPTDA EVILSYLLQK FLNPSFTSLP IGEVDLNKCE  60
PWDLPSKPQV SYAYILNSLL LSRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in responses to drought stress and salt stress. Transactivates the stress response genes LEA19 and PM19L. {ECO:0000269|PubMed:19135985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0014100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:19135985). Induced by drought stress (PubMed:19135985). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:19135985}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235251e-140AC123525.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence.
GenBankAP0149671e-140AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126191e-140CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615868.11e-40NAC domain-containing protein 45
SwissprotQ2RB331e-41NAC45_ORYSJ; NAC domain-containing protein 45
TrEMBLI1QX991e-53I1QX99_ORYGL; Uncharacterized protein
STRINGORGLA11G0014100.12e-54(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2554155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-22Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zheng X,Chen B,Lu G,Han B
    Overexpression of a NAC transcription factor enhances rice drought and salt tolerance.
    Biochem. Biophys. Res. Commun., 2009. 379(4): p. 985-9
    [PMID:19135985]