PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0121600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 349aa    MW: 37804.2 Da    PI: 7.7808
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0121600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.71e-4090166278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        C v+gC++dls++++yhrrhkvCe+h+k+pvv+v+g+eqrfCqqCsrfh+l efD++k+sCr+rL++hn+rrrk+q+
  ORGLA11G0121600.1  90 CSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQCSRFHNLAEFDDGKKSCRKRLDGHNRRRRKPQH 166
                        **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.5E-3483151IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.94187164IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.71E-3889168IPR004333Transcription factor, SBP-box
PfamPF031107.7E-3190163IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEWAAAATKA ASWGMAVAAA DDAGPTXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXGG GGGGGGAEAC SVDGCRSDLS RCRDYHRRHK VCEAHAKTPV  120
VVVAGQEQRF CQQCSRFHNL AEFDDGKKSC RKRLDGHNRR RRKPQHDALN PRSFLPYHQA  180
NQFSVYPQTF PIADQNADAL MRPLDRHPPF SISFSGTFRE PKQFPFMQDG GSGLGAARHD  240
LLRPFSSPED GANITTTRSA CNGVPHGLDP ECALSLLSSS LHPSPAAGIS SATAPPQFAP  300
SSFSRIAASS QAVTTAFASD GGSVAGDHVL VPAVTYEDPS QAMPFSWQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-2980163184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146163KKSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0121600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1336080.0AC133608.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0085G12, complete sequence.
GenBankAC1355690.0AC135569.6 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0018F17, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617950.10.0putative squamosa promoter-binding-like protein 19
SwissprotQ2R3Y10.0SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBLI1R0C40.0I1R0C4_ORYGL; Uncharacterized protein
STRINGOS11T0496600-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129612532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.16e-40SBP family protein