PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0122000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 306aa    MW: 34935.4 Da    PI: 9.0585
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0122000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033108130223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C+ C ++++++ +L  Hi+  H
  ORGLA11G0122000.1 108 SCSVCWRVYPTSRLLSIHISEaH 130
                        6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003554.180105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082105IPR007087Zinc finger, C2H2
SMARTSM003557.4107130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280109130IPR007087Zinc finger, C2H2
SMARTSM003550.29145170IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280147170IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MQQKPAAEAM EEELKGEAVG PRRPGLGLWL AARRRLAPDD PFFAAGDMER ELLAKQVALD  60
LSEDERYQLE RMEVASANAL LCPISGCGAH LDCLENFEDH YRTRHTASCS VCWRVYPTSR  120
LLSIHISEAH DSFFQAKVAR GFPMYECLVE GCGVKLKSYK SRQQHLLDKH QFPKSFEFFK  180
KARPSQRQRN KNQKQRQTVH KGDETSETLM DVDGKKSSRY MNSRYRPKQH DGKESKENEH  240
SSCKEAKNNE MEVDKQVDEL ASAVSRLSTA DSTLSSISFG HRRSRGLAFV PRSIRQNKQV  300
SQTEPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0122000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0607020.0AK060702.1 Oryza sativa Japonica Group cDNA clone:001-030-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615475.10.0zinc finger protein 511 isoform X2
TrEMBLI1R0C80.0I1R0C8_ORYGL; Uncharacterized protein
STRINGORGLA11G0122000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.12e-80zinc ion binding;nucleic acid binding;zinc ion binding