PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0125800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 126aa    MW: 14516.7 Da    PI: 7.8589
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0125800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM271.2e-0811653286
                NAM 32 evikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
                       ++i+++di++++P d+  + +++++  +fF++++kk++ ++ +n a++ g+W+++
  ORGLA11G0125800.1 11 DFITDIDILHHNPLDIVPTRQEKKNGKHFFTRKEKKHHGDNCRNHAADVGFWRKS 65
                       679*************63445667799*********99999999999*****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-10685IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MAGPQMSLPY DFITDIDILH HNPLDIVPTR QEKKNGKHFF TRKEKKHHGD NCRNHAADVG  60
FWRKSSFAES MEWAMQEFQL AGSYLLPCFV MRFATSDGTE QPFGCTRVTI ANMRHCILTP  120
YCCFIG
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0125800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1361501e-104AC136150.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0023F12, complete sequence.
GenBankAP0149671e-104AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126191e-104CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697669.18e-25PREDICTED: NAC transcription factor NAM-B1-like
TrEMBLI1R0G64e-92I1R0G6_ORYGL; Uncharacterized protein
STRINGORGLA11G0125800.16e-93(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5298522