PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0125900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 240aa    MW: 26180.5 Da    PI: 6.6148
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0125900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM23.71.3e-071049848
                NAM  8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                       hPt+ elv +yL +++ + +l+   +i +v+i++++Pwd+ 
  ORGLA11G0125900.1 10 HPTEGELVFHYLYRRAVNMPLPS-XFICDVNILRHNPWDIV 49
                       9*******************999.88*************94 PP
2NAM26.12.3e-08519787128
                NAM  87 gkdkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                        g++k+v+ +  +        vg++ tL+fy g+++++e+t+W m+e+rl
  ORGLA11G0125900.1  51 GSEKPVYYNqgG--GsdcmlVGMRGTLTFYFGNSRTAERTKWGMQEFRL 97 
                        667777776441..234455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100510.4141166IPR003441NAC domain
SuperFamilySSF1019418.63E-209107IPR003441NAC domain
PfamPF023652.5E-71097IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MHLPAVGMSH PTEGELVFHY LYRRAVNMPL PSXFICDVNI LRHNPWDIVP GSEKPVYYNQ  60
GGGSDCMLVG MRGTLTFYFG NSRTAERTKW GMQEFRLAGN GLSPYPAMKH ATGDGSKPPC  120
NCAETTIAKR NDGLSAVLRN VLAVTPLVEI VVEPDGSWLI CRIYRTRQRA LPVITPPAIE  180
NAREIINPPA NGNAREAQVH FIDFLPQGSH IESSSPCSCI VGPSLAEGSD ESAGSVDQKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0125900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9401960.0FJ940196.1 Oryza sativa Japonica Group clone KCS246C06 NAM protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615934.12e-82NAC transcription factor 25
TrEMBLI1R0G71e-178I1R0G7_ORYGL; Uncharacterized protein
STRINGORGLA11G0125900.11e-179(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-13NAC domain containing protein 47