PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0169400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 178aa    MW: 20161.8 Da    PI: 9.1116
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0169400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-111031431055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +rRR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  ORGLA11G0169400.1 103 KRRRERINERLRILQQLVPNG-----TKVDISTMLEEAVQYVKFLQ 143
                        9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.4E-1493153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.21293142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1495155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-1199148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-11102147No hitNo description
PfamPF000101.1E-8103143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
WMMRDLAHQV ITGNKRMFPM DEHFEQQQKK PKKKTRTSRS VSSSSTITDY ETSSELVNPS  60
CSSGSSIGED SIAATDGSVV LKQSGNSRGH KQCSKDTQSL YAKRRRERIN ERLRILQQLV  120
PNGTKVDIST MLEEAVQYVK FLQLQIKLLS SDDTWMFAPL AYNGMNMDLG HTLAENQE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0169400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126195e-99CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697725.12e-81PREDICTED: transcription factor bHLH139-like
SwissprotQ84WK04e-44BH085_ARATH; Transcription factor bHLH85
TrEMBLI1R1Q21e-131I1R1Q2_ORYGL; Uncharacterized protein
STRINGORGLA11G0169400.11e-132(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.14e-33root hair defective 6-like 4
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]