PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0184200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 252aa    MW: 28143.2 Da    PI: 7.2812
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0184200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.87.1e-263897258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
                       dDg++WrKYGqK+v+g+ +prsY+rC+++   gC+++kkv++++ dp +v+++Yeg H +
  ORGLA11G0184200.1 38 DDGFSWRKYGQKDVEGAVHPRSYFRCAHKmttGCKARKKVQHTDGDPLMVDVVYEGVHSC 97
                       8***************************9999**************************98 PP
2WRKY68.59.9e-22129189259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgy+W++YGqK++ g+++pr YYrC ++   gC++ k+ + ++ dp +++++Y+geH+++
  ORGLA11G0184200.1 129 DDGYSWKRYGQKNIFGANYPRCYYRCIHKtttGCSAEKNAQATDGDPLLFDVVYHGEHTCD 189
                        8*************************877777***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-252398IPR003657WRKY domain
SuperFamilySSF1182903.53E-233597IPR003657WRKY domain
SMARTSM007742.9E-353799IPR003657WRKY domain
PfamPF031061.8E-243897IPR003657WRKY domain
PROSITE profilePS5081121.0353896IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.0E-24118190IPR003657WRKY domain
PROSITE profilePS5081120.289123191IPR003657WRKY domain
SuperFamilySSF1182902.88E-22124190IPR003657WRKY domain
SMARTSM007744.0E-30128190IPR003657WRKY domain
PfamPF031061.2E-21129189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
EIRIFLQKNL REGAHKSVGS RKEPQMERRK VRMSYTEDDG FSWRKYGQKD VEGAVHPRSY  60
FRCAHKMTTG CKARKKVQHT DGDPLMVDVV YEGVHSCAGV HSAASSKSNL RPTKSIQVRA  120
SSKDVGPPDD GYSWKRYGQK NIFGANYPRC YYRCIHKTTT GCSAEKNAQA TDGDPLLFDV  180
VYHGEHTCDL LSTHSNDVEP ISPQSGLDDD MCTDDTTTVS TRHDSNTDAS SISSQLDWTN  240
CKDELDGPPT TL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-1638188568OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0184200.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1356441e-157AC135644.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0085H07, complete sequence.
GenBankAP0149671e-157AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126191e-157CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616376.21e-102probable WRKY transcription factor 53
TrEMBLI1R2500.0I1R250_ORYGL; Uncharacterized protein
STRINGORGLA11G0184200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3095334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.26e-26WRKY DNA-binding protein 26