PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0184400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 135aa    MW: 15351.2 Da    PI: 9.1215
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0184400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.31.6e-1567455127
                NAM  55 ekewyfFskrdkkyatgkrknratksgyWk.atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         ++w++F ++d          r+t sgyWk a g+   v+s++++ vglkk++ fy+gr+p+g+kt+W ++e+ 
  ORGLA11G0184400.1   6 GERWFYFRQHDG-----WMMDRSTPSGYWKtAAGTASFVYSADRHPVGLKKSMLFYRGREPSGRKTKWKIDEFW 74 
                        467888877755.....5689*********778999999999******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.8211113IPR003441NAC domain
SuperFamilySSF1019411.96E-16685IPR003441NAC domain
PfamPF023651.8E-6973IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MGAGAGERWF YFRQHDGWMM DRSTPSGYWK TAAGTASFVY SADRHPVGLK KSMLFYRGRE  60
PSGRKTKWKI DEFWALDNAA NGSEELLAQL CRSRQNVGLM PRFPLSLCRL YSTKSSSERH  120
VLATSSNEIS EDESD
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0184400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126191e-141CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615335.13e-78disease resistance protein RGA5-like isoform X1
RefseqXP_015615336.13e-78disease resistance protein RGA5-like isoform X1
TrEMBLI1R2521e-96I1R252_ORYGL; Uncharacterized protein
STRINGORGLA11G0184400.12e-97(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2689955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.16e-22NAC domain containing protein 90