PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0187400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 240aa    MW: 27480.3 Da    PI: 8.8679
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0187400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.2e-171060148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                       +g+WT++Ed++lv+ v+++G ++W+ +a+  g   ++Rt+k+c++rw +yl
  ORGLA11G0187400.1 10 KGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGlrgLNRTGKSCRLRWVNYL 60
                       79***********************************************97 PP
2Myb_DNA-binding55.21.6e-1767111248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        gr++++E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  ORGLA11G0187400.1  67 GRMSPQEEHLIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 111
                        89*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.611560IPR017930Myb domain
SuperFamilySSF466894.49E-298107IPR009057Homeodomain-like
SMARTSM007173.6E-14962IPR001005SANT/Myb domain
PfamPF002491.2E-151060IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-181167IPR009057Homeodomain-like
CDDcd001672.20E-101260No hitNo description
PROSITE profilePS5129425.81261115IPR017930Myb domain
SMARTSM007174.3E-1565113IPR001005SANT/Myb domain
PfamPF002496.6E-1667110IPR001005SANT/Myb domain
CDDcd001674.55E-1168111No hitNo description
Gene3DG3DSA:1.10.10.608.8E-2468114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MVTVREEMRK GPWTEQEDLQ LVCTVRLFGD RRWDFVAKVS GLRGLNRTGK SCRLRWVNYL  60
HPGLKHGRMS PQEEHLIIEL HARWGNRWSR IARRLPGRTD NEIKNYWRTH MRKKAQERRG  120
DMSPSSSSSS LAYQSCLLDT VPIISMDGGD IHDDRSCMAR VLKSTQSVMD GYTMDQIWRE  180
IEAPGAPSLL GIDEGKDKAC SNLPCPLLTS TMSDYSCPEV FWKIDNEGTR MLATQSGYGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2771151105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0187400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116260.0AK111626.1 Oryza sativa Japonica Group cDNA clone:J013113N19, full insert sequence.
GenBankDQ0752600.0DQ075260.1 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS1-3 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877324.11e-167myb-related protein MYBAS1 isoform X1
SwissprotQ53NK61e-168MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLI1R2821e-179I1R282_ORYGL; Uncharacterized protein
STRINGORGLA11G0187400.11e-179(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-73myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]