PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0188000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 166aa    MW: 18852.1 Da    PI: 6.9414
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0188000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000247496123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C  Cg++F+++  L  H  +H
  ORGLA11G0188000.1 74 FECRTCGRRFPSHQALGGHRTSH 96
                       89*************99998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.3E-107398IPR007087Zinc finger, C2H2
SuperFamilySSF576671.91E-774136No hitNo description
SMARTSM003550.0927496IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.32574101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099114141IPR007087Zinc finger, C2H2
SMARTSM003551.1114136IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-9114138IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MDQQEDYTSD LQLELEEEDD DNQLSQLAEL DVQLSLSLAC GSTTAMSSSG DEEDAEPRRR  60
KRRHRRRDEE AAAFECRTCG RRFPSHQALG GHRTSHLRPT TNKRRPGPSK PLIHACEVCG  120
LGFQMGQALG GHMRRHRPRN IDLGHKQIIM PEVRPNSTLQ LLDLFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15660PRRRK
25765RRRKRRHRR
35967RKRRHRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0188000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1340450.0AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence.
GenBankAK2433070.0AK243307.1 Oryza sativa Japonica Group cDNA, clone: J100055D19, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616383.17e-82zinc finger protein ZAT1
TrEMBLI1R2881e-118I1R288_ORYGL; Uncharacterized protein
STRINGORGLA11G0188000.11e-118(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.11e-16C2H2 family protein