PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0188100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 171aa    MW: 18044.5 Da    PI: 10.8738
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0188100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000234567123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C  Cg++Fs+   L  H  +H
  ORGLA11G0188100.1 45 FQCRTCGRRFSTFQALGGHRTSH 67
                       89**********99998888877 PP
2zf-C2H218.45.9e-06102124123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C  Cgk+F +   L  H+r+H
  ORGLA11G0188100.1 102 HRCDMCGKVFATGQALGGHMRRH 124
                        79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.1E-43768IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.2E-104469IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8664572IPR007087Zinc finger, C2H2
SuperFamilySSF576672.78E-94567No hitNo description
SMARTSM003550.134567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SuperFamilySSF576672.78E-997124No hitNo description
PfamPF139123.1E-12101125IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471102124IPR007087Zinc finger, C2H2
SMARTSM003550.0028102124IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-4102124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEVATNTTTR SPVKLMLVLT LSPASKVIAK GGGGVKRVHL DGGAFQCRTC GRRFSTFQAL  60
GGHRTSHKRP RVRADGLDLL LGARPGKLGA GGGGGASTPV VHRCDMCGKV FATGQALGGH  120
MRRHRPLVSR NGTMSTTWTA AAAAATMSGS SSEERDDDDD DVHNYNFIHF L
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0188100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3058660.0AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616529.17e-91zinc finger protein ZAT8
TrEMBLI1R2891e-121I1R289_ORYGL; Uncharacterized protein
STRINGORGLA11G0188100.11e-121(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.13e-21C2H2 family protein