PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0007500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 185aa    MW: 21280.5 Da    PI: 5.923
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0007500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.94.9e-192791259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
               WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59
                       +Dg++WrKYGqK +  ++++rsYYrC+ +   gCp++k v++ ++ +    k++++ Y g+H+++
  ORGLA12G0007500.1 27 NDGHQWRKYGQKWISRAKHSRSYYRCANSkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCK 91
                       8*************************9887889********99876522226899********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-221291IPR003657WRKY domain
PROSITE profilePS5081114.6652168IPR003657WRKY domain
SuperFamilySSF1182904.58E-202291IPR003657WRKY domain
SMARTSM007746.8E-292692IPR003657WRKY domain
PfamPF031064.4E-222791IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
RNLIDPLDYD RKNAEHTGST VAQAPHNDGH QWRKYGQKWI SRAKHSRSYY RCANSKVQGC  60
PATKTVQQMD SSGNGTSKLF NVDYYGQHTC KGDGIANPYV VDTAHHSMEP INQNECNSPT  120
LEHEAHEVQD ERFENLCMVQ NMPEYLIDFE LERAFEFIMN SPLGSEHWTF DDSIRCEHSP  180
ICIWG
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0007500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1020930.0AK102093.1 Oryza sativa Japonica Group cDNA clone:J033083A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620022.11e-132probable WRKY transcription factor 46 isoform X1
TrEMBLI1R3G91e-140I1R3G9_ORYGL; Uncharacterized protein
STRINGORGLA12G0007500.11e-140(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133251529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.14e-16WRKY DNA-binding protein 46