PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0035900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 817aa    MW: 93416.5 Da    PI: 5.1409
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0035900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.13.4e-2497183290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         Y++Y++++GFsvrk k+++ + +++i +++++Cskeg +++e+ +  +++ +++ trt+Cka+++ + +++g+w+v++++ eHnHel+
  ORGLA12G0035900.1  97 LYCDYGHRMGFSVRKGKQYYFTGTKTIRTKDYYCSKEGLKDDEQLT--EANFNKPDTRTNCKAMVRYRVDSEGHWRVIQIVPEHNHELV 183
                        7*****************************************9988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.4E-2297183IPR004330FAR1 DNA binding domain
PfamPF105512.1E-26294388IPR018289MULE transposase domain
PROSITE profilePS509669.545576612IPR007527Zinc finger, SWIM-type
PfamPF044347.7E-5578608IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-6587614IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MEETSIAIEI DGEAICLDSV GDNEEQGTQE NQEIQIIYDA ENEGQVAFDN GEQGKEEHPM  60
RNEEENQENI PVIPSREELT EELRNKIANS EEEAYRLYCD YGHRMGFSVR KGKQYYFTGT  120
KTIRTKDYYC SKEGLKDDEQ LTEANFNKPD TRTNCKAMVR YRVDSEGHWR VIQIVPEHNH  180
ELVRPEEVHL LRSVRTLSIP KPGVLNAMVN AEIQAMHENL HMNDDGAECQ SQHGIQSYTL  240
LEPEDSEALV GYFKRRTIEQ GMFYWDVLVE DGRMTNFFWR DGRSRVDYDC FGDVVVFDTA  300
YRTSKYNMIC APFVGVNHHG QDVMLGCALL LDESLTSYEW LFKSFLDSMG GHPPKTIFTV  360
MAETISKAIE GVLPETRHCI CQWSIEKNLQ SHLGTLNVSG TFHSMLTKCM RECESEAEFE  420
ETWAMMLNEC NMQDDQWLSD LYQQRRKWST VHHRDAFDGG INSLDRSDSS NNVLSSIANE  480
STSPTQFILD FDKLVGSWRT NESAEDIQCT QTSPESRVKH RSILEHAAEV YTRKVYKSLE  540
TEYLDGCSAT SYQEMQCSET LYRFEFILQR SGPKVQVVFL DTSTMDLSCT CKKFETTGIL  600
CSHAINALDL KNFDRIPERY VLKRWKKYVR KGTYLFPSDE FVGQDCTEPG LAFRNKAMRF  660
VYDLLMKSKG HQDTRKLILD VFENGEKLVE SLCELKRLNA HASGREKDGS KVEKRKKKSA  720
KQEKSSRNVK QAVSSQTADT VLVDPPNQNQ YFATEDMATN SSIGRPFFYQ GFPSAGVSTS  780
QIQGHTNIHS VPQCAPQEYS AYGAAHPPPT FGGGRNF
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0035900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0658380.0AK065838.1 Oryza sativa Japonica Group cDNA clone:J013039J03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620809.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLI1R4A30.0I1R4A3_ORYGL; Uncharacterized protein
STRINGORGLA12G0035900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-84FAR1-related sequence 5