PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0036900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 462aa    MW: 50601.6 Da    PI: 4.266
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0036900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS93.63.2e-291753063132
               GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgd.......pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                        +lLl+ A av++gd+  a+a+++rl +l a  +g+       p+  la yf+++L+ r+++      +a p+s+ ++     +  a+++++e
  ORGLA12G0036900.1 175 DLLLAGAMAVDAGDAVHASAIMSRLDDLlADIAGRrsceatsPVDHLAYYFARGLKLRISG------AATPASSPPPPAANWSSPAYRMLQE 260
                        689999*******************998766666456666679******************......3344444444445667789****** PP

               GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaL 132
                        ++P++kf+h+taNqaIlea+e +  vH++Df++++G+QW +L+ +L
  ORGLA12G0036900.1 261 LTPFVKFAHFTANQAILEATEDDLDVHVVDFNVGEGVQWSSLMLKL 306
                        *******************************************776 PP
2GRAS43.64.7e-14308459227373
               GRAS 227 vLklvkslsPkvvvvveqeadh.nse..........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307
                        +L ++  l+Pk+v+++e e+++ +++          +F e f++a+ +++a+++s+++ l + ++e ++++ + +g+e   vv  + ++ + 
  ORGLA12G0036900.1 308 LLGTITILQPKLVILIEDELSRiSKNppspslaappPFPEFFSDAVAHFTAVMESTASCLVSYDDE-AWLSLRRVGEE---VVGPRVEDAVG 395
                        6899999************999544489****************************8776554433.33332223433...34455555555 PP

               GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaW 373
                        r  +l+   +++e  G+++ ++s + ++q k+l   ++  g+ v  +e+g l l+Wk+rpL+svS W
  ORGLA12G0036900.1 396 RYGSLAGGAQMME--GLRAREVSGFSVAQGKMLAGLFG-GGFGVVhQEKGRLALCWKSRPLISVSLW 459
                        6666677778876..***********************.67876638899999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519147462IPR005202Transcription factor GRAS
PfamPF035141.1E-26175306IPR005202Transcription factor GRAS
PfamPF035141.6E-11308459IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
METMSYPCSL LIPFSTQFEE ISSSSLLLWS PQAEENPHEN ANMYEFDADH SHDQIHQDHQ  60
FLDMMVIQES ANEFDGNHSH DQIHQDHEFL ETMVIQESAN EFDGDHSHDQ IHQDHEFLEM  120
MAIQESANDV LQLQDDFSVP NADPLAASFE FDERLAVAGH ENGNVVAAQE ESAGDLLLAG  180
AMAVDAGDAV HASAIMSRLD DLLADIAGRR SCEATSPVDH LAYYFARGLK LRISGAATPA  240
SSPPPPAANW SSPAYRMLQE LTPFVKFAHF TANQAILEAT EDDLDVHVVD FNVGEGVQWS  300
SLMLKLLLLG TITILQPKLV ILIEDELSRI SKNPPSPSLA APPPFPEFFS DAVAHFTAVM  360
ESTASCLVSY DDEAWLSLRR VGEEVVGPRV EDAVGRYGSL AGGAQMMEGL RAREVSGFSV  420
AQGKMLAGLF GGGFGVVHQE KGRLALCWKS RPLISVSLWC PK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-1420430624131GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0036900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809511.18e-66nodulation-signaling pathway 2 protein-like isoform X2
TrEMBLI1R4B30.0I1R4B3_ORYGL; Uncharacterized protein
STRINGORGLA12G0036900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP171141111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.12e-12GRAS family protein