PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0039500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 414aa    MW: 43465.8 Da    PI: 10.7694
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0039500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.88.5e-15151183133
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                        C nC + +Tp+WR+gp g +tLCnaCG++ r  
  ORGLA12G0039500.1 151 CLNCDAVETPQWRSGPMGRSTLCNACGVRLRAV 183
                        99**************************99865 PP
2GATA56.83e-18279313135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cg+t+Tp+WR+gp g  tLCnaCG++yr  +l
  ORGLA12G0039500.1 279 CVHCGSTETPQWREGPTGRGTLCNACGVRYRQGRL 313
                        *******************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012178.1E-147890No hitNo description
PRINTSPR012178.1E-1497113No hitNo description
SuperFamilySSF577161.66E-12144186No hitNo description
PROSITE profilePS5011412.097145184IPR000679Zinc finger, GATA-type
SMARTSM004015.0E-12145196IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.2E-13149183IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.17E-9150184No hitNo description
PfamPF003203.8E-12151182IPR000679Zinc finger, GATA-type
PROSITE patternPS003440151176IPR000679Zinc finger, GATA-type
PRINTSPR012178.1E-14201217No hitNo description
PRINTSPR012178.1E-14220237No hitNo description
PRINTSPR012178.1E-14248273No hitNo description
SMARTSM004013.1E-16273323IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.716273309IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-14275335No hitNo description
Gene3DG3DSA:3.30.50.109.1E-15277311IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.52E-15278335No hitNo description
PfamPF003204.6E-16279313IPR000679Zinc finger, GATA-type
PROSITE patternPS003440279304IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MAAVEGGIGE PPGLARERRP RLRRSVAATG DMDGDGDVGG GGGGGGGGGV RYVLALPAMA  60
SLAVLIAHLD AAVPVPRRPR SYLPRAVPMA WWAFRLPVFR PPPPPPPPPA KNPVKEEEGV  120
ARVVVVVAPP PPVDPGEEEA GKRAAKRARR CLNCDAVETP QWRSGPMGRS TLCNACGVRL  180
RAVGSLPEHR APAARTTTAA PASPPDSPIW TPGHKPPSSS PDIYLVRRTP KLPVTRPPRT  240
KQAPPTAPAP APPPPPPQPA SPKTKTKAKA KKPKRKRSCV HCGSTETPQW REGPTGRGTL  300
CNACGVRYRQ GRLLPEYRPK GSPTFSPSVH AANHRQVLEL RRQQRQSTNP STPPPPPVSA  360
AEPIPDEQKE EVVSVPVAAA APATDGSAAS SLDALLLDGP SAPLIVDGDD FLVS
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0039500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683060.0AK068306.1 Oryza sativa Japonica Group cDNA clone:J013136H07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620068.10.0vegetative cell wall protein gp1
TrEMBLI1R4D90.0I1R4D9_ORYGL; Uncharacterized protein
STRINGORGLA12G0039500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.24e-23GATA transcription factor 11