PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0040600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 465aa    MW: 50588.7 Da    PI: 5.7144
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0040600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.84.9e-07230251223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C++Cgk F+r  nL+ H+r H
  ORGLA12G0040600.1 230 FCGICGKGFKRDANLRMHMRGH 251
                        6*******************98 PP
2zf-C2H210.70.0017319342123
                        EEETTTT.EEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                        ++C+ Cg k+Fs   +Lk+H + +
  ORGLA12G0040600.1 319 HVCGRCGaKRFSVMADLKTHEKHC 342
                        79******************9876 PP
3zf-C2H210.90.0014351365620
                        TTEEESSHHHHHHHH CS
            zf-C2H2   6 CgksFsrksnLkrHi 20 
                        Cg+sFsrk+ L  H 
  ORGLA12G0040600.1 351 CGTSFSRKDKLFAHV 365
                        **************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.03E-5228251No hitNo description
SMARTSM003550.0091229251IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.759229256IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-5230255IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
SMARTSM0035589281314IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.03E-5314340No hitNo description
SMARTSM0035547319341IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010044Biological Processresponse to aluminum ion
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDRDQMMNTM RDQAANLTSM NPLFYPFMAD DALLGMAPPP PQQLLPSASI QHMDWSPDTM  60
LDNLTFIEEK IRQVKDVIRS MAGRRASSSS AATPEQQLVN ADLTCLIVQL ISTAGSLLPS  120
LKNSSFLSRT TPPPAAAAGA AQAVSLAAGE SSSSARNNEM NREDEEEQMG SPDYDELFKG  180
WTNGGAMDEC VGAAGDEQDA RENPAAAAEE EKYEVLQLEE DEILAPHTHF CGICGKGFKR  240
DANLRMHMRG HGDEYKSAAA LAKPPPPPEG EEQPPQPERR YSCPHAGCKR NRMHASFQPL  300
KTILCVKNHY KRSHCEKRHV CGRCGAKRFS VMADLKTHEK HCGRDRWLCS CGTSFSRKDK  360
LFAHVALFQG HAPALPPPPP PPTSGRRRHK QEEPEFTWGG GGGDEFLDVK GIAGVGSGSG  420
GGDEFFSAGS FGAMDFGFGQ LDASLAMLLP SEQFAGDHQE ENGDK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance. {ECO:0000269|PubMed:19880795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0040600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3798460.0AB379846.1 Oryza sativa Japonica Group STAR3 mRNA for C2H2-type domain containing zinc finger protein, complete cds.
GenBankAL7317610.0AL731761.3 Oryza sativa chromosome 12, . BAC OJ1119_B11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL9548250.0AL954825.3 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620753.10.0zinc finger protein STAR3
SwissprotQ2QX400.0ART1_ORYSJ; Zinc finger protein STAR3
TrEMBLI1R4F00.0I1R4F0_ORYGL; Uncharacterized protein
STRINGORGLA12G0040600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.35e-79C2H2 family protein
Publications ? help Back to Top
  1. Xia J,Yamaji N,Kasai T,Ma JF
    Plasma membrane-localized transporter for aluminum in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(43): p. 18381-5
    [PMID:20937890]
  2. Tsutsui T,Yamaji N,Feng Ma J
    Identification of a cis-acting element of ART1, a C2H2-type zinc-finger transcription factor for aluminum tolerance in rice.
    Plant Physiol., 2011. 156(2): p. 925-31
    [PMID:21502187]
  3. Famoso AN, et al.
    Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping.
    PLoS Genet., 2011. 7(8): p. e1002221
    [PMID:21829395]
  4. Yokosho K,Yamaji N,Ma JF
    An Al-inducible MATE gene is involved in external detoxification of Al in rice.
    Plant J., 2011. 68(6): p. 1061-9
    [PMID:21880027]
  5. Huang CF,Yamaji N,Chen Z,Ma JF
    A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice.
    Plant J., 2012. 69(5): p. 857-67
    [PMID:22035218]
  6. Chen ZC,Yamaji N,Motoyama R,Nagamura Y,Ma JF
    Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice.
    Plant Physiol., 2012. 159(4): p. 1624-33
    [PMID:22732245]
  7. Tsutsui T, et al.
    Comparative genome-wide transcriptional analysis of Al-responsive genes reveals novel Al tolerance mechanisms in rice.
    PLoS ONE, 2012. 7(10): p. e48197
    [PMID:23110212]
  8. Chen ZC, et al.
    Adaptation to acidic soil is achieved by increased numbers of cis-acting elements regulating ALMT1 expression in Holcus lanatus.
    Plant J., 2013. 76(1): p. 10-23
    [PMID:23773148]
  9. Xia J,Yamaji N,Ma JF
    A plasma membrane-localized small peptide is involved in rice aluminum tolerance.
    Plant J., 2013. 76(2): p. 345-55
    [PMID:23888867]
  10. Yokosho K,Yamaji N,Fujii-Kashino M,Ma JF
    Functional Analysis of a MATE Gene OsFRDL2 Revealed its Involvement in Al-Induced Secretion of Citrate, but a Lower Contribution to Al Tolerance in Rice.
    Plant Cell Physiol., 2016. 57(5): p. 976-85
    [PMID:26872836]
  11. Che J,Yamaji N,Shen RF,Ma JF
    An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.
    Plant J., 2016. 88(1): p. 132-142
    [PMID:27302336]
  12. Yokosho K,Yamaji N,Fujii-Kashino M,Ma JF
    Retrotransposon-Mediated Aluminum Tolerance through Enhanced Expression of the Citrate Transporter OsFRDL4.
    Plant Physiol., 2016. 172(4): p. 2327-2336
    [PMID:27744299]