PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0056800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 296aa    MW: 31620.6 Da    PI: 8.9203
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0056800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.54.8e-3171126359
        ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                        ++rY+eClkNhAa++Gg a+DGCgEfmp  geeg+ +al+C+ACgCHRnFHR+e + 
  ORGLA12G0056800.1  71 AARYRECLKNHAAAIGGSATDGCGEFMPG-GEEGSLDALRCSACGCHRNFHRKELDA 126
                        689*************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.3E-2872123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2273125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-2973123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.52474123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.4E-21180242IPR009057Homeodomain-like
SuperFamilySSF466891.61E-11183242IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-19193242IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDLSGAQGEL PLPMHAAASP YLGLHHDHHH HHGGGGGGGG MNGRHMSPPT PPAAAEESKA  60
VVVVSSSATA AARYRECLKN HAAAIGGSAT DGCGEFMPGG EEGSLDALRC SACGCHRNFH  120
RKELDAAAAP PLHHHHHQLL GVGAHPRGHG HHHHHLLVAA LPPPTRMVMP LSAMHTSESD  180
DAAARPGGGA AARKRFRTKF TAEQKARMLG FAEEVGWRLQ KLEDAVVQRF CQEVGVKRRV  240
LKWGGGGGPV XERGDVFFLG EEGGGVVIHX EIKXKYTWPL HLHLSGCRXH RKXNKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-171932421766ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0056800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9548530.0AL954853.5 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618832.11e-171zinc-finger homeodomain protein 3
SwissprotQ2QW441e-172ZHD3_ORYSJ; Zinc-finger homeodomain protein 3
TrEMBLI1R4W20.0I1R4W2_ORYGL; Uncharacterized protein
STRINGORGLA12G0056800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.26e-35homeobox protein 31