PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA12G0057100.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

DBB

Protein Properties

Length: 213aa MW: 21910.2 Da PI: 5.0103

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA12G0057100.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.5	4.8e-07	5	46	6	41
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e+ e+ C ++ lC+ C + H+ Ht+v ORGLA12G0057100.1 5 CDACEQAEAAVLCCADEAALCRRCDAAVHSAnrlagkHTRVA 46 *****************************6688999999876 PP
2	zf-B_box	25.7	2.3e-08	63	98	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 ++C+ ++ek +fC +++ llC++C ++ H H ORGLA12G0057100.1 63 PTCDICQEKTGYFFCLEDRALLCRSCDVAVHTAtaH 98 79****************************955663 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.783	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	3.2E-8	5	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.58E-5	5	47	No hit	No description
Pfam	PF00643	2.4E-5	5	46	IPR000315	B-box-type zinc finger
Gene3D	G3DSA:3.30.40.10	2.5E-4	51	95	IPR013083	Zinc finger, RING/FYVE/PHD-type
SMART	SM00336	2.7E-11	60	107	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.257	60	107	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.0E-6	63	98	IPR000315	B-box-type zinc finger
CDD	cd00021	9.87E-5	65	89	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MKIGCDACEQ AEAAVLCCAD EAALCRRCDA AVHSANRLAG KHTRVALLLP SSSAAAGDDD 60 HHPTCDICQE KTGYFFCLED RALLCRSCDV AVHTATAHAA AHRRFLITGV RIGGSVDAAA 120 AADVIVSPTS SSIAPAGSAS RNHAVAGAGA AGNNNGRSPA PVRFSGGDGG VEPEQQWPWS 180 DVFAADDDDD VSAAMEQCYY HGISEPHSSS LTG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA12G0057100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067820	0.0	AK067820.1 Oryza sativa Japonica Group cDNA clone:J013117D12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618519.1	1e-116	B-box zinc finger protein 23
TrEMBL	I1R4W5	1e-152	I1R4W5_ORYGL; Uncharacterized protein
STRING	ORGLA12G0057100.1	1e-152	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12151	25	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	2e-34	light-regulated zinc finger protein 1