PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0060700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 720aa    MW: 81528.7 Da    PI: 5.2602
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0060700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1773.7e-24101191289
               FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                        fYneYA+ +GF  r+ +s++s  +++ +++++fvCs+eg +++++ +   + +++r+ra+ r gC+a+++v ++ +++w+v+kle+ HnH+l
  ORGLA12G0060700.1 101 FYNEYARWLGFPFRVGRSRRSkGMEEVVIMKRFVCSREGAHKKKQPStsgEATSKRERASMREGCNAMMEVVRD-KDHWVVSKLEKAHNHSL 191
                        9*******************944567789***********9999888787888999***************999.9**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-21101191IPR004330FAR1 DNA binding domain
PfamPF105516.2E-28284375IPR018289MULE transposase domain
PROSITE profilePS5096610.979564600IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-8567597IPR007527Zinc finger, SWIM-type
SMARTSM005750.0012575602IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MEDDERGDGD ELIADYVDCL MSLDTNSRSC QNDALILEGA PDDVDDDAAA AAAAAAEQDV  60
MRDFAPADGD GDGDADADAE NDPKEPVLGM TFESEETAKM FYNEYARWLG FPFRVGRSRR  120
SKGMEEVVIM KRFVCSREGA HKKKQPSTSG EATSKRERAS MREGCNAMME VVRDKDHWVV  180
SKLEKAHNHS LGIGTRYGYL RARGLPDVSN KIAAMGSDGT ASLRQNFLGE TGDGQGLLDY  240
LKKKQANDPR CSHAIQVDKN GCLMNVFWAD SRAKEAYRHF GDAVTFDTSY KKTKYMMPFV  300
TFSGVNHHLQ TVIFGCAFLM EETESSFSWL FETWLAAMGG KAPGSLVTDQ NRAMKAAIGK  360
VFPDTCHRFC KWYILSRTKQ KLCHAYSEHP DLRDEIESCV IESETISTFE TSWMSILEKY  420
DLRKHAWLQA IYNIRQKWVP LYMMGTFFAE ISPTQKLETM NDFYKKYFNT KTTLEVFLNQ  480
FDSTMTSRYE NEAQADIDTR LNEATTITAS PIEKQAASTY TKAVFSRFQE EFTESLGYII  540
QKTEEGRVSK FSITKDEDDP SDTFCVTYNA SSKMAKCSCK YFKFSGILCR HILGVFIIVD  600
PRTLPPDYFL KRWTRNARHD ELLEDNSNNH KDATCQSITS RYNVLCADAI RCADKGSASK  660
AVYKAAKDIL QKAYEEIIAY ERNPGRGLQR DAININEDIT IDDTMNDQSL PDFWTKGMLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0060700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620344.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1R5010.0I1R501_ORYGL; Uncharacterized protein
STRINGORGLA12G0060700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-145FAR1-related sequence 5