PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0121100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 615aa    MW: 64443.7 Da    PI: 6.3775
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0121100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-06218239526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+ f ++  C++Gd C +aHg
  ORGLA12G0121100.1 218 PCPEFKKGAGCRRGDMCEYAHG 239
                        8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.5E-950136IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.33E-850127IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.48852123IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.44688123IPR002110Ankyrin repeat
PfamPF000230.01991122IPR002110Ankyrin repeat
SMARTSM003569.8E-4213240IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4216240IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258218241IPR000571Zinc finger, CCCH-type
SMARTSM0035687249272IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.841249273IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MGEPGGAEAA VSARLLELAA DDNAAGLGEL LAAWPSLADE PAPWYTPARG AEPLTPLMVA  60
AVYGSVGCLD ALLSPPYLVD PNRASASSLS TPLHLAAAGG SASAPAAVSR LLAAGADPAL  120
LDHLQRRASD LVALPPNSLP LKNHLLSLLG ARKEWPPDPS LPDIKNGAYA SDDFRMYSFK  180
VRACSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFKKGAGCRR GDMCEYAHGV  240
FESWLHPAQY RTRLCKDGVG CARRVCFFAH TPDELRPLYV STGSAVPSPR GALEMAAAAA  300
AMGMGLSSPG SSSFTPPLSP SAGGGGGGGG GGAWPQQPSV PALCLPGSAG NLHLSRLRTS  360
LSARDMAVDE LLAAAAAAAD YDGLVASPAS IRSARGKALV PSNLDELFSA ELAAAAASRS  420
PRYADQGGAA FSPTRKAAVL NQFQQQQQQS LLSPRAAAVT PEPVSPMSSR LLAALAQREK  480
MQQQTLRSMS SRDLGNAASL LVGSPVSSSM SKWGFPSGNP DWGADDEELG RLKRCSSFEL  540
RSGAANGNHE PDLSWVNTLV KEPTPEKMMT TTSAMDSIGI LGQNTSRDHI VGGEDDTAGV  600
ISSWLEQLQL DEMVV
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0121100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139000.0AL713900.4 Oryza sativa chromosome 12, . BAC OJ1126_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620786.10.0zinc finger CCCH domain-containing protein 67
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLI1R6Q50.0I1R6Q5_ORYGL; Uncharacterized protein
STRINGORGLA12G0121100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-132CCCH-type zinc finger protein with ARM repeat domain