PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA12G0141600.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 245aa MW: 28158.2 Da PI: 8.3864

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA12G0141600.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.6e-17	10	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +g+WT++Ed++lv+ v+++G ++W+ Ia+ g ++Rt+k+c++rw +yl ORGLA12G0141600.1 10 KGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGlrgLNRTGKSCRLRWVNYL 60 79***********************************************97 PP
2	Myb_DNA-binding	54.7	2.3e-17	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ ORGLA12G0141600.1 66 RGRMSPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 111 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.608	5	60	IPR017930	Myb domain
SuperFamily	SSF46689	2.02E-29	9	107	IPR009057	Homeodomain-like
SMART	SM00717	4.9E-15	9	62	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-16	10	60	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.6E-19	11	67	IPR009057	Homeodomain-like
CDD	cd00167	3.68E-11	12	60	No hit	No description
PROSITE profile	PS51294	25.552	61	115	IPR017930	Myb domain
SMART	SM00717	2.2E-16	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	4.5E-15	66	110	IPR001005	SANT/Myb domain
CDD	cd00167	6.70E-12	68	111	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.9E-24	68	114	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MVTVREETRK GPWTEQEDLQ LVCTVRLFGE RRWDFIAKVS GLRGLNRTGK SCRLRWVNYL 60 HPGLKRGRMS PHEERLILEL HARWGNRWSR IARRLPGRTD NEIKNYWRTH MRKKAQERKS 120 NMSPSSSSSS LTYQSCHPET PSMIIGIEEQ ELHGGSGCIT SIMKSTPVDM DGYPMDQIWM 180 EIEAPNVLPG PCFDEAKDSA SNSLSGPLLP YPMWDYYCPE TCLRMDDEIK VAPQFGYGKG 240 VGPCY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	6e-28	10	115	4	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	6e-28	10	115	4	105	C-Myb DNA-Binding Domain
1msf_C	6e-28	10	115	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA12G0141600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT833282	0.0	CT833282.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025877776.1	1e-164	myb-related protein MYBAS2 isoform X2
Swissprot	Q4JL76	1e-167	MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBL	I1R7B0	0.0	I1R7B0_ORYGL; Uncharacterized protein
STRING	ORGLA12G0141600.1	0.0	(Oryza glaberrima)
STRING	ORGLA12G0206100.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP636	37	169

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	7e-68	myb domain protein 59

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]