PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA12G0149800.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 254aa MW: 25607.3 Da PI: 9.6174

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA12G0149800.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.8	6.3e-35	52	106	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s++tkfCyynny+++qPr+fC+aCrryWt GG+lrnvP+Gg++rk+ + ORGLA12G0149800.1 52 EQCPRCASRDTKFCYYNNYNTAQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRPR 106 68**************************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	27.512	52	106	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-30	52	104	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-21	54	103	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEAPLHQSPV PLLPPPPPPP RVVGVQQQQQ QQEAVVPPPP AMAAAAGGGG REQCPRCASR 60 DTKFCYYNNY NTAQPRHFCR ACRRYWTLGG SLRNVPIGGS TRKRPRPSRP ARAAIAAAAA 120 ASASGSQIAA QQQQAPPVVM SQHEAAAAAA AASGGGGGGG LLVSLLGAAP VLEGRLGGGI 180 GVDLLGGEQL GFGAMAMPPA PLLWPARVLE GGDAWKSAAA AAGVSYSPFP ALWQELAAAA 240 PVELAGGGGA PQLM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	106	KRPRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA12G0149800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL954829	0.0	AL954829.6 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025878036.1	5e-91	dof zinc finger protein MNB1A-like
TrEMBL	I1R7J2	1e-174	I1R7J2_ORYGL; Uncharacterized protein
STRING	ORGLA12G0149800.1	1e-175	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-25	DOF zinc finger protein 1