PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G05080.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 647aa    MW: 70984.6 Da    PI: 8.3433
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G05080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-064974126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ykt+ C +f  +G C + d C+FaHg
  ORUFI01G05080.1 49 YKTRVCETFVTSGRCMFEDGCTFAHG 74
                     9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.11E-84779IPR000571Zinc finger, CCCH-type
SMARTSM003560.00614875IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-134980IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1694976IPR000571Zinc finger, CCCH-type
SMARTSM003560.49131158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.709131159IPR000571Zinc finger, CCCH-type
SMARTSM007025.0E-19411590IPR006620Prolyl 4-hydroxylase, alpha subunit
SMARTSM002540.0037606647IPR003582ShKT domain
PROSITE profilePS516708.775607647IPR003582ShKT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418Molecular FunctionL-ascorbic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MAGRGGMVEW EVGRRRDSED VIVLSPGPPA RRRPPPGKAV EPEGRGFVYK TRVCETFVTS  60
GRCMFEDGCT FAHGDEELRP SLTACAGGWR KPSPSLSAAA PPVAVAPTPP PAQVVHELLA  120
RGSGSGGGGH RAITKVCFEF RDKGICYFGE TCAFPHVSAA EIRQGSRLSS MSSSSWEMPA  180
RRSVAVTVPR TFVSVPPVAP PPPPPHYRVN NSSSYNAASM AAAAPAASDA NLVAQQPPPE  240
QGGRKMTRLE MLSLKKMTGI YGDWLEGARE MRIWCSLVQV KRRRPEEGKR GRRMGSGIGA  300
VLVLVAAWLT FAPPGALASS RSIKLWMNRF DYRGLMQPFG GICEIPIIKL SPYQLNDYNQ  360
EAVEKGQHRW GKWFDLSIAQ EKLVNSTGGS TASSSHLVFD PSKSKRLSWH PRIFLYEGFL  420
SDMECDHLVS MGRGNMESSL AFTDGDRNSS YNNIEDIVVS KIEDRISLWS FLPKENGESI  480
QVLKYGVNRS GSIKEEPKSS SGAHRLATIL MYLSDVKQGG ETVFPRSEMK DAQAKEGAPS  540
QCSGYAVRPA KGNAILLFNL RPDGETDKDS QYEECPVLEG EKWLAIKHIN LRKFDYPKSS  600
LASEDECTDE DDRCVSWAAS GECDRNPVFM IGSSDYYGSC RKSCRVC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jig_A2e-3240659115217PROLYL-4 HYDROXYLASE
2jig_B2e-3240659115217PROLYL-4 HYDROXYLASE
2jij_A2e-3240659124226PROLYL-4 HYDROXYLASE
2jij_B2e-3240659124226PROLYL-4 HYDROXYLASE
2jij_C2e-3240659124226PROLYL-4 HYDROXYLASE
2v4a_A2e-3240659124226PROLYL-4 HYDROXYLASE
2v4a_B2e-3240659124226PROLYL-4 HYDROXYLASE
2v4a_C2e-3240659124226PROLYL-4 HYDROXYLASE
2v4a_D2e-3240659124226PROLYL-4 HYDROXYLASE
3gze_A2e-3240659116218Predicted protein
3gze_B2e-3240659116218Predicted protein
3gze_C2e-3240659116218Predicted protein
3gze_D2e-3240659116218Predicted protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704840.0AK070484.1 Oryza sativa Japonica Group cDNA clone:J023048G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622130.10.0probable prolyl 4-hydroxylase 6 isoform X2
TrEMBLA0A0E0MS170.0A0A0E0MS17_ORYRU; Uncharacterized protein
STRINGORUFI01G05080.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1354177