PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G05760.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 269aa    MW: 28340 Da    PI: 10.8272
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G05760.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.24.3e-10143163121
                      ---SS-EEEEEEE--TT-SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                      ldDgy+WrKYGqK+vk++++p
  ORUFI01G05760.2 143 LDDGYKWRKYGQKVVKNTQHP 163
                      59****************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-12128163IPR003657WRKY domain
SuperFamilySSF1182907.32E-9135164IPR003657WRKY domain
PROSITE profilePS5081112.277138181IPR003657WRKY domain
SMARTSM007748.7E-4143188IPR003657WRKY domain
PfamPF031062.3E-6144163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MFPSPGRAVM ALGHHGAARQ PPTTMAAAAS SSTTSAAAAP ATATTTVAFS FQHPTPTPSC  60
EEGDHRGRPQ MGNKGEAAAA MGAMGINDAG NNTAAAAAAQ HHLGVGAVRM KKVGGGGGGG  120
GKARRKVREP RFCFKTMSDV DVLDDGYKWR KYGQKVVKNT QHPSPLNRRN VPYGALLNSY  180
GMPHFMPSPS THASHLPPRG QLVASVDACG PSDADRIFPL RSTARETRSR ENINSSDLMD  240
LSAIAIAHCI STKQPNHKVG ASRERKKER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418530.0AY341853.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632226.11e-75uncharacterized protein LOC4325330 isoform X1
TrEMBLA0A0E0MSA20.0A0A0E0MSA2_ORYRU; Uncharacterized protein
STRINGORUFI01G05760.31e-145(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.14e-18WRKY DNA-binding protein 13