PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G07580.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 330aa    MW: 37973.3 Da    PI: 7.2248
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G07580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.31e-14168216348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT+eEd  l ++ + +G ++W+++a++m+    +R++kqc++rw+++l
  ORUFI01G07580.1 168 AWTPEEDACLERLARGYGFRHWRRVAEEMQpreRRRSPKQCRDRWRDHL 216
                      8*********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.194161220IPR017930Myb domain
SMARTSM007176.4E-12165218IPR001005SANT/Myb domain
PfamPF002494.6E-14168216IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-16168226IPR009057Homeodomain-like
CDDcd001679.72E-12168216No hitNo description
SuperFamilySSF466892.52E-17168239IPR009057Homeodomain-like
PROSITE profilePS500906.574217269IPR017877Myb-like domain
SMARTSM007179.7221271IPR001005SANT/Myb domain
SuperFamilySSF466899.96E-5223278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-5227270IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEKEVPKNLL RISIPSSTQD TERYQTILHN RMIPSSYQVS DDSTHVSGDT YKYHVILIRY  60
HAIFYHVSCD TRKVSYDFNH VSRDTHEVSC DTCRVSDDFY HVSRDTREVS DDFYHVSRDT  120
CEVSDDTYQV SVHLGMETSS SDFSSTTEVA ATPSSAMRII LRIRLSPAWT PEEDACLERL  180
ARGYGFRHWR RVAEEMQPRE RRRSPKQCRD RWRDHLARDV YHRPFTADDD AELAHLRLRG  240
GGGDRWKDIS RAAHCRTSRA MRRRWRELRK SDAFLRALYW HPDQPVPPLL DDALSCSDVL  300
DSSVASYRGG CDAVAGGGTI VSPGFACFAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0020920.0AP002092.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031E09.
GenBankAP0020930.0AP002093.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466B10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636830.11e-101transcription factor MYB3R-5
TrEMBLA0A0E0MSZ10.0A0A0E0MSZ1_ORYRU; Uncharacterized protein
STRINGORUFI01G07580.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.14e-16myb domain protein r1