PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G08780.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 274aa    MW: 31227 Da    PI: 5.7043
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G08780.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-151053146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g++++eE+ ++++++++ G++ W++ a+ ++ gRt++++k++w++
  ORUFI01G08780.2 10 KGAFSKEEENKIINLHRKIGNK-WSRMAADLP-GRTDNEIKNYWNT 53
                     799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.36E-14161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-24157IPR009057Homeodomain-like
PROSITE profilePS5129422.434559IPR017930Myb domain
SMARTSM007172.7E-14957IPR001005SANT/Myb domain
PfamPF002492.6E-141053IPR001005SANT/Myb domain
CDDcd001673.97E-111253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MNHLRPNLKK GAFSKEEENK IINLHRKIGN KWSRMAADLP GRTDNEIKNY WNTRIKKCKN  60
NRWLLYPANA CNDALNEDQY GSVDPSVREK LTNNQLEDTT SMYSAPQFSY ASISNILDRR  120
LASKDYDSIE DQRNRIEVAA EYEISLPVLK TTNNDIFPSA SIFANHGISN GNLSALSTTD  180
ALQMELPLIQ FDPNNQFIYS RDYATHLTNL ALLNDQSEEL LNHIDVLNYV VMKKELSGGS  240
LSPTINMPCK ATAYSSELPL CKGYREQDLD FYTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1225751106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankD886210.0D88621.1 Oryza sativa mRNA for OSMYB5, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881555.11e-175transcription factor GAMYB
TrEMBLA0A0E0MTD30.0A0A0E0MTD3_ORYRU; Uncharacterized protein
STRINGOMERI05G18170.11e-171(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.12e-28myb domain protein 33