PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G08780.3
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 327aa    MW: 37068.5 Da    PI: 5.9309
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G08780.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.6e-121056146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqk 46
                     +g++++eE+ ++++++++ G++ W++ a+ +    +Rt++++k++w++
  ORUFI01G08780.3 10 KGAFSKEEENKIINLHRKIGNK-WSRMAADISspCRRTDNEIKNYWNT 56
                     799*******************.***********99**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-20160IPR009057Homeodomain-like
SuperFamilySSF466892.89E-10164IPR009057Homeodomain-like
PROSITE profilePS5129418.89562IPR017930Myb domain
SMARTSM007172.5E-11960IPR001005SANT/Myb domain
PfamPF002491.6E-111056IPR001005SANT/Myb domain
CDDcd001671.72E-71256No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MNHLRPNLKK GAFSKEEENK IINLHRKIGN KWSRMAADIS SPCRRTDNEI KNYWNTRIKK  60
CKNNRWLLYP ANACNDALNE DQYGSVDPSV REKLTNNQLE DTTSMYSAPQ FSYASISNIL  120
DRRLASKDYD SIEDQRNRIE VAAEYEISLP VLKTTNNDIF PSASIFANHG ISNGNLSALS  180
TTDALQMELP LIQFDPNNQF IYSRDYATHL TNLALLNDQS EELLNHIDVL NYVVMKKELS  240
GGTHTSMTPS NELVVPRYEG DVPPLQDDFT PYLYLNGANL SIFEDIKSHC GFENVANLGV  300
VADSLKLCES ESMRRTNSKT KTRTTLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankD886210.0D88621.1 Oryza sativa mRNA for OSMYB5, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881555.11e-165transcription factor GAMYB
TrEMBLA0A0E0MTD40.0A0A0E0MTD4_ORYRU; Uncharacterized protein
STRINGORUFI01G08780.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.11e-23myb domain protein 33