PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G09990.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 106aa MW: 11683.6 Da PI: 4.4973

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G09990.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	77.4	4e-24	1	90	24	104
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg.......kaaksaakskksqksa 104 ++++c a +F+L+ eLG+++d++t++WLlqqa+pai ++tgt++++ + a++s s+ ++ + + +++++++q+++ ORUFI01G09990.1 1 MPVLCVAWIFQLTWELGHKSDGETVQWLLQQAEPAIVAATGTGTIPDGHIsvLAAQSLSQFYHQVGSadaagqlPHPHHHHQHHQQQQED 90 9*****************************************999995553333333333332222233333332222222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.1E-18	1	90	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	18.012	1	39	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MPVLCVAWIF QLTWELGHKS DGETVQWLLQ QAEPAIVAAT GTGTIPDGHI SVLAAQSLSQ 60 FYHQVGSADA AGQLPHPHHH HQHHQQQQED GEDERYDGES DEESGQ

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007789	5e-98	AC007789.1 Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence.
GenBank	AP003074	5e-98	AP003074.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10.
GenBank	AP014957	5e-98	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009408353.1	5e-23	PREDICTED: transcription factor TCP20-like
Swissprot	Q9C518	3e-21	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A0E0MTU4	3e-70	A0A0E0MTU4_ORYRU; Uncharacterized protein
STRING	ORUFI01G09990.1	4e-71	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2864	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-23	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]