PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G12420.4
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 329aa    MW: 36837.4 Da    PI: 7.798
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G12420.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.92.9e-104385345
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                     + k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  ORUFI01G12420.4 43 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 85
                     56889*************************9877777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-83588No hitNo description
SMARTSM003389.8E-841104IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4384387IPR004827Basic-leucine zipper domain
PfamPF001703.0E-74485IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.78E-74588No hitNo description
PROSITE patternPS0003604863IPR004827Basic-leucine zipper domain
PfamPF141444.9E-34127202IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MADMSPRTDT STDDTDDNHM LEPGQLALAA ASDSDRSKDK HEDQKTLRRL AQNREAARKS  60
RLRKKAYVQQ LENSRLKLTQ LEQELQRARQ QGIFISSSVD QTHSMSGNGA LAFDMEYARW  120
LEEHNRQINE LRSAVNAHAG DNELRGVVDK IMSHYEEIFK QKGNAAKADV FHVLSGMWKT  180
PAERCFLWLG GFRPSELLKL LSTQLEPLTE QQLSGIANLQ QSSQQAEDAL SQGMEALQQS  240
LAETLAGSLG SSGSTGNVAN YMGQMAMAMG KLGTLENFLR QADNLRQQTL QQMQRILTTR  300
QSARALLVIS DYSSRLRALS SLWLARPKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0512960.0AB051296.1 Oryza sativa OsNIF3 mRNA for bZIP transcription factor, complete cds.
GenBankAK2427430.0AK242743.1 Oryza sativa Japonica Group cDNA, clone: J090049N20, full insert sequence.
GenBankHM9911680.0HM991168.1 Oryza sativa Japonica Group cultivar Dongjin putative TGA2-like protein 3 mRNA, complete cds.
GenBankKM0965710.0KM096571.1 Oryza sativa Indica Group histone-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621703.10.0transcription factor TGA2.3
RefseqXP_015621704.10.0transcription factor TGA2.3
RefseqXP_025880532.10.0transcription factor TGA2.3
SwissprotQ0JNL30.0TGA23_ORYSJ; Transcription factor TGA2.3
TrEMBLA0A089VSH30.0A0A089VSH3_ORYSI; Histone-binding protein
TrEMBLA0A0E0FK570.0A0A0E0FK57_ORYNI; Uncharacterized protein
TrEMBLA0A0E0MUP70.0A0A0E0MUP7_ORYRU; Uncharacterized protein
STRINGOS01T0279900-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.51e-144TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]