PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G15770.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 562aa    MW: 59995.4 Da    PI: 4.8086
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G15770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.91e-19391571112
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgk 88 
                      +p+G+ F P+d el    L+ k+ +++    l++v+++++i++++P  L+ + + +ee+  +yfFs+r+ +++  +++r++r++k g+Wka+g 
  ORUFI01G15770.1  39 MPVGCYFVPKDLELFAI-LRCKLVRSQlpGALNNVFEHIRILEFHPALLHeTYIGNEEDgYIYFFSRRQFATKarNKRRPTRVAKGGTWKASGG 131
                      699************66.6666555552334456799************8445555555356999999855443389999**9*********** PP

              NAM  89 dkevlsk..kgelvglkktLvfykgr 112
                      +k++ sk  +g +vg k t+vfy+ r
  ORUFI01G15770.1 132 SKTLRSKkvGGIDVGQKLTMVFYERR 157
                      ****998888899**********654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-2333161IPR003441NAC domain
PROSITE profilePS5100522.18939187IPR003441NAC domain
PfamPF023657.0E-940157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MAEQPLGGGG GGGGDGNNNG KWKGKEKVVP EYGKNRHGMP VGCYFVPKDL ELFAILRCKL  60
VRSQLPGALN NVFEHIRILE FHPALLHETY IGNEEDGYIY FFSRRQFATK ARNKRRPTRV  120
AKGGTWKASG GSKTLRSKKV GGIDVGQKLT MVFYERRFEG DQNPIKTLGH ARLEDLAVYR  180
LYKIKRKEDE EPVNAAAAAS STDEPSTSSA LPPPTPPRPL PDMAGPSSAT PLLPLQLPDM  240
AGPSSSTPLL PLQLLGLAGS SSAMSLPLPL QLPGLAGSSS AMSLPAQQMP GMAGSSSAMP  300
LPLSLPGLAG GMMSMADQAN MASTSQASTP SSELLQDWYD EFEITYGAVA PPSPSTISWE  360
EPQSSPTGWW PSPNGEPVQH DGYLGMAANP TSYMMEHPLP TAAIPPEPMT PPTSSPAPPP  420
AVDNHHRLSP PHDAAGSNYN HPELAGYNGG VQAQHEHQHQ PQEPQPALLV DGEDGYGAIA  480
DGDGDTQLGV AELDTERIAE MVNHIMDGEF EFKFEDNTVL KYNEVFPDDD KVVAAPMMID  540
GGGDGDGADG VSFRPLVDKN VI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661070.0AK066107.1 Oryza sativa Japonica Group cDNA clone:J013052A02, full insert sequence.
GenBankAP0033310.0AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.10.0NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0E0MVU30.0A0A0E0MVU3_ORYRU; Uncharacterized protein
STRINGORUFI01G15770.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.11e-09NAC family protein