PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G21630.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 450aa MW: 48820.4 Da PI: 6.4237

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G21630.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.3	5.5e-27	293	342	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i +edl++yF++pi++AA+e++v+lTvLK++CR++G++RWPhRk+ksl ORUFI01G21630.1 293 DHIGFEDLRRYFYMPITKAAREMNVGLTVLKKRCRELGVARWPHRKMKSL 342 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.496	282	362	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-21	295	342	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MEMHECCYYG GSIGGDWLNP LAAIPPPCSS SSSSWSSQLL LLSDHDDVLL HSAGDHGGAV 60 AGIGGACMTA DLVNLNGFDH VVIRDEEMEM AAGYLPVAAS AAAAADVDHY MYQQFQLEPD 120 QFVSTLPAVA VAVAATAGGG SHDDELLRMP FTDIDLDAFA DARDVVVGVG EPKPSPQHTL 180 DAAIALPAVG GGGAHHFGTQ DDDVKFDVTK QRNDAALAGD DSLSMVIVES YEMGMRRHAA 240 EQEQEQKPKI ITSAATTLTP LPLPPPPPPP PRVTRSRRDG SSAATAGGKT RLDHIGFEDL 300 RRYFYMPITK AAREMNVGLT VLKKRCRELG VARWPHRKMK SLKSLILNEM GSKGMSAAAM 360 RRELEALENC CALMERNPAV ELTERTKKLR QACFKENYKR RRAAAVDVLD LDHCFSFAAG 420 HCHRHHHQQL ALPPPPAAAA DHRRRDFFGY

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MEMHECCYYG GSIGGDWLNP LAAIPPPCSS SSSSWSSQLL LLSDHDDVLL HSAGDHGGAV  60
AGIGGACMTA DLVNLNGFDH VVIRDEEMEM AAGYLPVAAS AAAAADVDHY MYQQFQLEPD  120
QFVSTLPAVA VAVAATAGGG SHDDELLRMP FTDIDLDAFA DARDVVVGVG EPKPSPQHTL  180
DAAIALPAVG GGGAHHFGTQ DDDVKFDVTK QRNDAALAGD DSLSMVIVES YEMGMRRHAA  240
EQEQEQKPKI ITSAATTLTP LPLPPPPPPP PRVTRSRRDG SSAATAGGKT RLDHIGFEDL  300
RRYFYMPITK AAREMNVGLT VLKKRCRELG VARWPHRKMK SLKSLILNEM GSKGMSAAAM  360
RRELEALENC CALMERNPAV ELTERTKKLR QACFKENYKR RRAAAVDVLD LDHCFSFAAG  420
HCHRHHHQQL ALPPPPAAAA DHRRRDFFGY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003933	0.0	AP003933.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06.
GenBank	AP004258	0.0	AP004258.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638205.1	0.0	uncharacterized protein LOC107276829
TrEMBL	A0A0E0MXX0	0.0	A0A0E0MXX0_ORYRU; Uncharacterized protein
STRING	ORUFI01G21630.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12888	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	4e-31	RWP-RK domain-containing protein