PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G23500.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 194aa    MW: 20995.8 Da    PI: 10.1211
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G23500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.6e-3184142159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYG+K+vk+s++pr+YYrC+s+gC+vkk+ver+++d ++v++tY g Hnh+
  ORUFI01G23500.1  84 LDDGYRWRKYGKKMVKNSPNPRNYYRCSSEGCRVKKRVERARDDARFVVTTYDGVHNHP 142
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-3371144IPR003657WRKY domain
SuperFamilySSF1182902.22E-2877144IPR003657WRKY domain
PROSITE profilePS5081133.3579144IPR003657WRKY domain
SMARTSM007741.1E-3684143IPR003657WRKY domain
PfamPF031061.5E-2485142IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MDDVEYYTPE VGFHSKQHNP PPVAAAPLEA GGGREQSRRE AAVNLGKMDR GPAPVSGGAA  60
TGGVPRSKNG SKIAFKTRSE VDVLDDGYRW RKYGKKMVKN SPNPRNYYRC SSEGCRVKKR  120
VERARDDARF VVTTYDGVHN HPAPLHLRPQ LPPPGGYSIA GAPAVVAPHG RLGLEEAEVI  180
ALFRGTTATS LLLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2675144877Probable WRKY transcription factor 4
2lex_A2e-2675144877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085220.0AK108522.1 Oryza sativa Japonica Group cDNA clone:002-144-B05, full insert sequence.
GenBankAY3418460.0AY341846.1 Oryza sativa (japonica cultivar-group) WRKY5 mRNA, complete cds.
GenBankCT8313670.0CT831367.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI006O16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635031.11e-141WRKY transcription factor SUSIBA2
TrEMBLA0A0E0FNN21e-140A0A0E0FNN2_ORYNI; Uncharacterized protein
TrEMBLA2WRV61e-140A2WRV6_ORYSI; Uncharacterized protein
TrEMBLQ94D501e-140Q94D50_ORYSJ; Os01g0584900 protein
STRINGOS01T0584900-011e-140(Oryza sativa)
STRINGONIVA01G23410.11e-140(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-38WRKY DNA-binding protein 50