PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G25350.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 1456aa MW: 150911 Da PI: 3.71

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G25350.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	34.3	4e-11	1366	1390	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr+lL+Y+rGA +V+C++C+t+ ORUFI01G25350.1 1366 CGSCRILLAYFRGAGYVHCTCCQTM 1390 ***********************96 PP
2	zf-LSD1	40.5	4.6e-13	1404	1428	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C tlL+YP+GAp+V+C+lC +V ORUFI01G25350.1 1404 CGHCATLLMYPFGAPAVKCSLCLFV 1428 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.4E-10	1363	1393	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.0E-7	1366	1389	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.5E-8	1402	1429	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.5E-10	1404	1428	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 1456 aa Download sequence Send to blast
MASSPEAPVP PESARMGSPP PSHSPSPPPL QGDPSLPTDA PPPEPSPQPH HATPIPPPSP 60 GQATEGWPRA EGGPPGAAAP PAPPSFFPSL ELGTSAAPPA LEAAAAGAGQ PGSPSPCPPA 120 EPAAEFYPGS AASSPSSSSY ETAEDDSPAS PPPTPPPLVL CASPDSSYTE SSPARDRFGD 180 EEGSHAAPEP PPPPTPLEGG PDASSAEPAA MASRAREPMG SRTAPEPPTP PLESGQEGFQ 240 QQQPHPPPTT HPECDSSEPA ELPLPPTSPA EIAYTSPDSV EVDVVAVSPE EAPGSTVAME 300 VMYGETDTSA VSVSPVLGSA ETDAAEIDVI AGMQEEAPGS TVAMEVMYRE NDTAAVSVSP 360 VLESREPDVA EGDVVAGVQE AHGSKFSMEV MYRETDAAAV SVSPVLESGE PDKAENDAVE 420 EMQEEAHGSR FAMEATYGEP DASAVSVSPV LESVEPDVTE IDVVSEIQEE APDSTLAMEV 480 TSGETDTAAV SAFPVLDGGD PDAAEKNVVA GMQEEAPDST LAIEVTSGET DTAAVSVSPV 540 LEGVDPDAAE IDVVAGMQEE APGSTLAMEV TYRETDATAA SVSPVLDSGD PDAAEVDVVV 600 GMQEQAAGSA LAMLVTYGET DTSAVSVSPV LESGEPDAAQ IDVVAGMQEE APGSMLAMEV 660 TYREVDAATV SVSPVLESVE PDAAKIDVVA RMQEEAPGSK LAMEVMYGET GTAAVSVPLV 720 LESREEGSLQ ESMQRPSSPT MNIEQESMQR PFSPTIGTET SSPEMAPAGS ENCKVSWLPL 780 PPPTPLGESM PSLPVAAAPK VLLVMLEEAV ESVPSSEALD VEKPASITQA EPSSPNTPPP 840 GFENFKSSWL PLPTTPPPVE TTDVLPDVVV TKAVEAPIEE VSRPLPALEV TNMESDTVLS 900 ILPTTVLPTE GTEGLLQQPL LRPPSPVVQS EPCLQNEMAP PGFENFKSSS EPCSAEEIAP 960 PGSDNFKSSS EPCLPEEMAP PGFENFKSSS EPCSQEEMAP PGFENFKSSW PPLPTLPQTV 1020 PDAAAADALA ATVEEAAGPP PALELEAMDV DMDAIHPPPL PFDSGVESLQ KPLPRAPSPI 1080 MQEAPCSPDR APPGFETYKS SQLLLPSPSL AQTTNVRQDQ SVTEPVSVIE EAPQLLHSVE 1140 VMGVHMDAVP PLLPSSESGA DGLSPQQFAQ PPPAEKDTTT CLPDMVHSGC DNSEPSQLLS 1200 LPAVISPVQT PDGLADVPAI DRVAVALEES PQRPLVSGEM EASTVPIRSS PLKNISEGSL 1260 PQLESESHSP TSQAADSLLD ASDSKSVAVA SEEMSQLPLA SQATTTDLVS TTAMQPQSEG 1320 IVDESLQPQH PPSSTAHDSP CLQDSVPLVP PPPSPYLNKE VGQMVCGSCR ILLAYFRGAG 1380 YVHCTCCQTM NYVLEAHEVG KVHCGHCATL LMYPFGAPAV KCSLCLFVTE IGERNVRRRL 1440 SIEQPTRTNS SGLAEA

Sequence ? help Back to Top

Protein Sequence Length: 1456 aa Download sequence Send to blast

MASSPEAPVP PESARMGSPP PSHSPSPPPL QGDPSLPTDA PPPEPSPQPH HATPIPPPSP  60
GQATEGWPRA EGGPPGAAAP PAPPSFFPSL ELGTSAAPPA LEAAAAGAGQ PGSPSPCPPA  120
EPAAEFYPGS AASSPSSSSY ETAEDDSPAS PPPTPPPLVL CASPDSSYTE SSPARDRFGD  180
EEGSHAAPEP PPPPTPLEGG PDASSAEPAA MASRAREPMG SRTAPEPPTP PLESGQEGFQ  240
QQQPHPPPTT HPECDSSEPA ELPLPPTSPA EIAYTSPDSV EVDVVAVSPE EAPGSTVAME  300
VMYGETDTSA VSVSPVLGSA ETDAAEIDVI AGMQEEAPGS TVAMEVMYRE NDTAAVSVSP  360
VLESREPDVA EGDVVAGVQE AHGSKFSMEV MYRETDAAAV SVSPVLESGE PDKAENDAVE  420
EMQEEAHGSR FAMEATYGEP DASAVSVSPV LESVEPDVTE IDVVSEIQEE APDSTLAMEV  480
TSGETDTAAV SAFPVLDGGD PDAAEKNVVA GMQEEAPDST LAIEVTSGET DTAAVSVSPV  540
LEGVDPDAAE IDVVAGMQEE APGSTLAMEV TYRETDATAA SVSPVLDSGD PDAAEVDVVV  600
GMQEQAAGSA LAMLVTYGET DTSAVSVSPV LESGEPDAAQ IDVVAGMQEE APGSMLAMEV  660
TYREVDAATV SVSPVLESVE PDAAKIDVVA RMQEEAPGSK LAMEVMYGET GTAAVSVPLV  720
LESREEGSLQ ESMQRPSSPT MNIEQESMQR PFSPTIGTET SSPEMAPAGS ENCKVSWLPL  780
PPPTPLGESM PSLPVAAAPK VLLVMLEEAV ESVPSSEALD VEKPASITQA EPSSPNTPPP  840
GFENFKSSWL PLPTTPPPVE TTDVLPDVVV TKAVEAPIEE VSRPLPALEV TNMESDTVLS  900
ILPTTVLPTE GTEGLLQQPL LRPPSPVVQS EPCLQNEMAP PGFENFKSSS EPCSAEEIAP  960
PGSDNFKSSS EPCLPEEMAP PGFENFKSSS EPCSQEEMAP PGFENFKSSW PPLPTLPQTV  1020
PDAAAADALA ATVEEAAGPP PALELEAMDV DMDAIHPPPL PFDSGVESLQ KPLPRAPSPI  1080
MQEAPCSPDR APPGFETYKS SQLLLPSPSL AQTTNVRQDQ SVTEPVSVIE EAPQLLHSVE  1140
VMGVHMDAVP PLLPSSESGA DGLSPQQFAQ PPPAEKDTTT CLPDMVHSGC DNSEPSQLLS  1200
LPAVISPVQT PDGLADVPAI DRVAVALEES PQRPLVSGEM EASTVPIRSS PLKNISEGSL  1260
PQLESESHSP TSQAADSLLD ASDSKSVAVA SEEMSQLPLA SQATTTDLVS TTAMQPQSEG  1320
IVDESLQPQH PPSSTAHDSP CLQDSVPLVP PPPSPYLNKE VGQMVCGSCR ILLAYFRGAG  1380
YVHCTCCQTM NYVLEAHEVG KVHCGHCATL LMYPFGAPAV KCSLCLFVTE IGERNVRRRL  1440
SIEQPTRTNS SGLAEA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621461.1	0.0	protein LOL5
TrEMBL	A0A0E0MZ73	0.0	A0A0E0MZ73_ORYRU; Uncharacterized protein
STRING	ORUFI01G25350.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13395	25	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-29	lsd one like 2