PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G28580.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 563aa    MW: 59311.8 Da    PI: 9.3903
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G28580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.84.5e-33353410259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+
  ORUFI01G28580.1 353 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHP 410
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-35337412IPR003657WRKY domain
SuperFamilySSF1182901.96E-29344412IPR003657WRKY domain
PROSITE profilePS5081132.535347412IPR003657WRKY domain
SMARTSM007742.6E-39352411IPR003657WRKY domain
PfamPF031063.3E-26353410IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MGVAVHWRRA GDSLHMGGEP RARAEAAWAA ALPAALVALV RDTATYTRMM HRLRMETPRG  60
PTCQLDPCCC CCTAHVIPPP PPVSRTHATR RDAEASVPPP PASAAVSSRS DGTGQMAAGV  120
TLACAAPPPL RAPRASDGGR RRGVVKGGAG TDTCRSPQRL NVRPRERERV RACVRARAKN  180
HEHGQRRREA AVDPAMSGEY QFQDELAPLF ARPGGGAGEM QMLPSSWFAD YLQAGTPMQM  240
DYDLMCRALE LPVGEDVKRE VGVVDVVAAG GGGGGERGGG GGGAGAGAGE EESPARCKKE  300
EDENKEEGKG EEDEGHKNKK GSAAKGGKAG KGEKRARQPR FAFMTKSEVD HLEDGYRWRK  360
YGQKAVKNSP YPRSYYRCTT QKCPVKKRVE RSYQDPAVVI TTYEGKHTHP IPATLRGSTH  420
LLAAHAQAAA AAAAAHQLHH HHGHHGHHGM APPLPLGSGA TAQFGRSSGI DVLSSFLPRA  480
AAAHHGITTM GGAAATTTTS HGLNSAISGG GGVSSETTSA VTVAASAQPS SPAALQMQHF  540
MAQDLGLLQD MLLPSFIHGT NQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-27343413878Probable WRKY transcription factor 4
2lex_A4e-27343413878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418440.0AY341844.1 Oryza sativa (japonica cultivar-group) WRKY3 mRNA, complete cds.
GenBankAY3418550.0AY341855.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
GenBankAY8706040.0AY870604.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640235.10.0uncharacterized protein LOC4326856 isoform X1
TrEMBLA0A0E0N0E10.0A0A0E0N0E1_ORYRU; Uncharacterized protein
STRINGORUFI01G28580.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-47WRKY DNA-binding protein 71