PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G28730.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WOX

Protein Properties

Length: 556aa MW: 57611.7 Da PI: 7.1936

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G28730.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.7	3.5e-07	67	104	2	38
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCT CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklg 38 ++R+++ +eq+++Le+ F++ +p ++e+ ++ ++l+ ORUFI01G28730.1 67 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIPRIRMQLQ 104 89***************99**********99985 PP
2	Homeobox	28.1	3.4e-09	105	151	16	57
HHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 16 eelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 e+ F++ +p ++e+ ++ ++l ++ +++V++WFqNr+ + k+ ORUFI01G28730.1 105 ESIFNSgMVNPPRDEIPRIRMQLqeygQVGDANVFYWFQNRKSRSKN 151 677998899***********************************995 PP
3	Wus_type_Homeobox	51	3.5e-17	66	105	2	41
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLee 41 +++RW+P+peQi+iLe++++sG+++P+++ei ri+++L+e ORUFI01G28730.1 66 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMQLQE 105 579***********************************86 PP
4	Wus_type_Homeobox	78.7	7.8e-26	105	152	17	64
Wus_type_Homeobox 17 eelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 e++++sG+++P+++ei ri+++L+eyG+++d+NVfyWFQNrk+R+++k ORUFI01G28730.1 105 ESIFNSGMVNPPRDEIPRIRMQLQEYGQVGDANVFYWFQNRKSRSKNK 152 79********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	6.3E-6	65	156	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.36E-9	65	153	IPR009057	Homeodomain-like
CDD	cd00086	0.00111	66	152	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-5	67	154	IPR009057	Homeodomain-like
Pfam	PF00046	8.7E-5	67	103	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-6	105	150	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MASSNRHWPS MFRSKHATQP WQTQPDMAGS PPSLLSGSSA GSAGGGGYSL KSSPFSSVGE 60 ERVPDPKPRW NPRPEQIRIL EAIFNSGMVN PPRDEIPRIR MQLQESIFNS GMVNPPRDEI 120 PRIRMQLQEY GQVGDANVFY WFQNRKSRSK NKLRSGGTGR AGLGLGGNRA SEPPAAATAH 180 REAVAPSFTP PPILPPQPVQ PQQQLVSPVA APTSSSSSSS DRSSGSSKPA RATSTQAMSV 240 TTAMDLLSPL AAACHQQMLY QGQPLESPPA PAPKVHGIVP HDEPVFLQWP QSPCLSAVDL 300 GAAILGGQYM HLPVPAPQPP SSPGAAGMFW GLCNDVQAPN NTGHKSCAWS AGLGLHWCGS 360 ADQLGLGKSS AASIATVSRP EEAHDVDATK HGLLQYGFGI TTPQVHVDVT SSAAGVLPPV 420 PSSPSPPNAA VTVASVAATA SLTDFAASAI SAGAVANNQF QGLADFGLVA GACSGAGAAA 480 AAPEAGSSVA AVVCVSVAGA APPLFYPAAH FNVRHYGDEA ELLRYRGGSR TEPVPVDESG 540 VTVEPLQQGA VYIVVM

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MASSNRHWPS MFRSKHATQP WQTQPDMAGS PPSLLSGSSA GSAGGGGYSL KSSPFSSVGE  60
ERVPDPKPRW NPRPEQIRIL EAIFNSGMVN PPRDEIPRIR MQLQESIFNS GMVNPPRDEI  120
PRIRMQLQEY GQVGDANVFY WFQNRKSRSK NKLRSGGTGR AGLGLGGNRA SEPPAAATAH  180
REAVAPSFTP PPILPPQPVQ PQQQLVSPVA APTSSSSSSS DRSSGSSKPA RATSTQAMSV  240
TTAMDLLSPL AAACHQQMLY QGQPLESPPA PAPKVHGIVP HDEPVFLQWP QSPCLSAVDL  300
GAAILGGQYM HLPVPAPQPP SSPGAAGMFW GLCNDVQAPN NTGHKSCAWS AGLGLHWCGS  360
ADQLGLGKSS AASIATVSRP EEAHDVDATK HGLLQYGFGI TTPQVHVDVT SSAAGVLPPV  420
PSSPSPPNAA VTVASVAATA SLTDFAASAI SAGAVANNQF QGLADFGLVA GACSGAGAAA  480
AAPEAGSSVA AVVCVSVAGA APPLFYPAAH FNVRHYGDEA ELLRYRGGSR TEPVPVDESG  540
VTVEPLQQGA VYIVVM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003760	0.0	AP003760.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0063G05.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025875666.1	0.0	WUSCHEL-related homeobox 7
Swissprot	Q0JKK6	0.0	WOX7_ORYSJ; WUSCHEL-related homeobox 7
TrEMBL	A0A0E0N0F9	0.0	A0A0E0N0F9_ORYRU; Uncharacterized protein
STRING	ORUFI01G28730.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2666	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	6e-39	homeobox-3