PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G29160.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 131aa MW: 12981.5 Da PI: 11.3051

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G29160.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	92.6	3.1e-29	39	93	5	58
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg.grrkn 58 l+cprC s++tkfCy+nny++ qPr++C++CrryWt+GGalr v + grr+ ORUFI01G29160.1 39 PLPCPRCGSRETKFCYFNNYNVRQPRHLCRSCRRYWTAGGALRRVASASpGRRRP 93 689*****************************************98766255554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-20	38	80	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-26	39	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.583	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MANLPSTAAA AAADASGFKL FGKAAGGGGG GGGGGGGEPL PCPRCGSRET KFCYFNNYNV 60 RQPRHLCRSC RRYWTAGGAL RRVASASPGR RRPRPSAARS AAAAAASASA ASPPAAVPAA 120 SEGAESVDSR S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003223	0.0	AP003223.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0007F06.
GenBank	AP003264	0.0	AP003264.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485G01.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619286.1	1e-38	dof zinc finger protein 5-like
TrEMBL	A0A0E0N0L5	4e-83	A0A0E0N0L5_ORYRU; Uncharacterized protein
STRING	ORUFI01G29160.1	7e-84	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14716	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	1e-21	Dof family protein