PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G38130.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 427aa    MW: 46477.9 Da    PI: 8.5292
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G38130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.44.8e-1077134155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s ykGV +++ +g+++A+++d   +n    rkr + g ++t+e Aa+ ++ a++k++g
  ORUFI01G38130.1  77 SIYKGVARHRGSGKYEAHLWDkQGWNPnqTRKRGRQGAYDTEEAAARTYDLAALKIWG 134
                      57*******************555533445599999*******************987 PP
2AP250.55e-16177228155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV  ++ +grW+A+I   +   g +k+ +lg+f+t eeAa a++ a+ +l+g
  ORUFI01G38130.1 177 SKYRGVAKHHHNGRWEARIGRaV---G-KKYLYLGTFDTQEEAATAYDLAAIQLRG 228
                      89****************99966...2.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.69E-1777144No hitNo description
SuperFamilySSF541711.18E-1377144IPR016177DNA-binding domain
PfamPF008472.1E-777134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-1378142IPR001471AP2/ERF domain
SMARTSM003802.4E-1778148IPR001471AP2/ERF domain
PROSITE profilePS5103218.41378142IPR001471AP2/ERF domain
CDDcd000183.57E-24177238No hitNo description
PfamPF008472.2E-11177228IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-18177238IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-19178237IPR001471AP2/ERF domain
SMARTSM003801.9E-27178242IPR001471AP2/ERF domain
PROSITE profilePS5103218.584178236IPR001471AP2/ERF domain
PRINTSPR003675.5E-5179190IPR001471AP2/ERF domain
PRINTSPR003675.5E-5218238IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MVSMRKKKKA FAVAAATTLL SPPWSSSSSS STASSCIVPP RTESGKKKSK HRKRAKDGTG  60
GDDDDAAVAA APRKGSSIYK GVARHRGSGK YEAHLWDKQG WNPNQTRKRG RQGAYDTEEA  120
AARTYDLAAL KIWGSDHVLN FPIDTYRKEL ERMQRMTREE YLATLRRKSS GFSRGVSKYR  180
GVAKHHHNGR WEARIGRAVG KKYLYLGTFD TQEEAATAYD LAAIQLRGRS AVTNFDASCY  240
TYTDHLPPPP PPQPPSVCKT EPELEPPQPA APPGSESLLR PKMEPCDDWE PPAICPSLRD  300
ADDADHAIAE ILPALCMDRA DFEARYPARR AREAAADGWS MSSDDVAAAS VDDDVLRSLP  360
DDVGFVDDVE SLFLDAPGPA AAAAAAAAMP DDVERAVQRA PSAASRRANA AAVSYAISSL  420
ASGRWWY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032470.0AP003247.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0425G02.
GenBankAP0035700.0AP003570.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0432B10.
GenBankAP0043310.0AP004331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0085D07.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646190.20.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0E0N3Z30.0A0A0E0N3Z3_ORYRU; Uncharacterized protein
STRINGORUFI01G38130.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-75AP2 family protein