PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G38500.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 524aa    MW: 59036.2 Da    PI: 10.06
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G38500.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.7e-21347407257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      r+R+t+t+ ql++Le+ F + n +ps++++++++++l    +++e++V++WFqNrRa+ k+
  ORUFI01G38500.2 347 RQRWTPTPMQLQILENIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 407
                      89*****************99**************************************97 PP
2Wus_type_Homeobox102.82.4e-33346409265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+++++G  tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq
    ORUFI01G38500.2 346 ARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 409
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-17342412IPR009057Homeodomain-like
PROSITE profilePS5007114.835343408IPR001356Homeobox domain
SMARTSM003891.9E-14345412IPR001356Homeobox domain
SuperFamilySSF466895.99E-18346410IPR009057Homeodomain-like
PfamPF000467.4E-19347407IPR001356Homeobox domain
CDDcd000866.41E-14347409No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MTKPGGSSAQ YCSYKDTATF LLLPPAYCLS LSLYLISCSA SSSSSLPQPR SPPTHRARRR  60
RDGRWLRRRP VPKSRAIASR RLAGLRHRSP ESVVVFELVP RGAVAAWSEG PVPPRAEGRG  120
PSPPPRATAL PCAVPLVVLE PLRRRRPPGL LLLVLLVIDA PIGTASWSLK PSSGLSPIGR  180
RHLFRILSIR IPAAVAVWRN ICFARFSCVS ISFYYFPERE RERERERERE RERGFLPFRC  240
CAKEHNFPNS FSPPCRGMEW DKAKASSGEA VDDRGGGEGG LGYVKVMTDE QMEVLRKQIS  300
IYATICEQLV EMHRALTAQQ DSIAGMRLGN LYCDPLMVPG GHKITARQRW TPTPMQLQIL  360
ENIFDQGNGT PSKQKIKDIT AELSQHGQIS ETNVYNWFQN RRARSKRKQA ALPNNNAESE  420
AEADEESPTD KKPKSDRPLH QNIAMRDHNS ERISEMHHFD TEHEQIRRMM YASNDSSSRS  480
SGSLGQMSFY DNVMSNPRID HFLGKVESPG SFPHMRSGES FDMY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222232RERERERERER
2400408RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1027880.0AK102788.1 Oryza sativa Japonica Group cDNA clone:J033107O14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626455.10.0WUSCHEL-related homeobox 8
SwissprotQ5QMM30.0WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A0E0N4530.0A0A0E0N453_ORYRU; Uncharacterized protein
STRINGORUFI01G38500.20.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-68WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]