PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G40080.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 1148aa    MW: 114190 Da    PI: 4.9708
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G40080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS229.41.7e-7061098934374
             GRAS  34 dgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdis.qGlQW 125
                      +g++ qRla+ f+eALa r    +++++++l+ +++++     + aa++ f  ++P+++++  +aN  I e +e e   vH++D++ +    QW
  ORUFI01G40080.1 610 EGRSAQRLASAFAEALALRFILPCDGVCRSLHLTRAPP--PPAVSAARQGFRAMCPFVRLAAAAANLSIAEVMEAErAVVHVVDLGGGvDANQW 701
                      6899***************************8888875..6677789999**************************5556*****9763699** PP

             GRAS 126 paLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.......eleeLrvkpgEalaVnlvlqlh 211
                      + L +  a+Rp+gpp  lR+T+v++    s++ l++++   a  A++l+++++f+++  +++e+l         ++L v pg  laV   lq+h
  ORUFI01G40080.1 702 VELVRLVAARPGGPPgLLRLTVVNE----SEDFLSAVAAYVAAEAQRLDLSLQFHPV-LSSIEELsatatgsIGSRLVVIPGQPLAVVANLQIH 790
                      ***********999989********....9**************************5.66666662222222235678888************* PP

             GRAS 212 rll........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres. 279
                      rll                          +++++ + d++L+++++l+Pk+vv++e+eadhn +++ +r+ +al+yy+alfd+l +++ p+++ 
  ORUFI01G40080.1 791 RLLafpdyvdgvasrrpaaeqsgssqhTMTTATKTKADALLRAIRDLNPKLVVLTENEADHNVAELGARVWNALNYYAALFDALeASSTPPAAv 884
                      ***********************99764455555589***********************************************5555666668 PP

             GRAS 280 ..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg......yrveeesgslv.lgWk 363
                        +er+ vEr +lg+ei+++v  eg+ rrerhetl++W er+ +aGF+pv+     a++  l  ++v+ + g       r  +  g++  ++W 
  ORUFI01G40080.1 885 ppHERACVERWVLGEEIKDIVVREGTGRRERHETLGRWAERMVAAGFSPVTAARALASTETLAQQMVAaGGGgagagvLRAAHGGGCFPvICWC 978
                      99*************************************************988877776666666663333455544444455777757**** PP

             GRAS 364 drpLvsvSaWr 374
                      d p++svS W+
  ORUFI01G40080.1 979 DVPVFSVSTWT 989
                      **********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.027542961IPR005202Transcription factor GRAS
PfamPF035146.0E-68610989IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 1148 aa     Download sequence    Send to blast
MAAAVEDSPA ATNTRKRLVG SSKLTMVAEI PRLALGGGGG VGEQLPAAGE DSAAATNTGK  60
RPVVGSSLAA MVVAAAGIQP DAFALGGLVE YPAGNGERDL LVVRFLQSIA AFLADGTCQM  120
QVNDGLSCIV DLAGGVGGGR SAQQLASAFT EALALRRVLA PAPPLWPSAA AGAGGASASG  180
SRYGGDGELV GGNVGSGKVT MAAEIPRLAL GGGGGGGERL PVPPMAAAEE DSPAATSTRK  240
RLVGSGKLTI VAEIPRLALG GGGGAGERLS AAGEDSAAAT NTGKCQVVGS SLAAMVAASA  300
GIQPDAFALG RPAEYPAGDG ERDLLMVWFL RSIAAFLADG TCQMQVNDGL SCVVDLASGV  360
GGERSALRLA STFAEALALR VLAPTPPLWP LPVAGAGGAS ASGSRYGGDG ELVGGNVGSG  420
KVTMVAEVPR LALGGGGGGG ERLPVPPMAA AEEDSPAATS TRKRLPSDQL NLAAAQGTSG  480
NLTMAVEIPR LALGGGGGGA GGERLPAAGE DSAPAATNAG KRPVVGLGFG SSLAAMAAAA  540
AAGIQPDAFA LGGPAEYPAG DGERDVLMVS FLRSIAAFLA DGTCQMQVND GLSCVVDLAG  600
GDADGGGVGE GRSAQRLASA FAEALALRFI LPCDGVCRSL HLTRAPPPPA VSAARQGFRA  660
MCPFVRLAAA AANLSIAEVM EAERAVVHVV DLGGGVDANQ WVELVRLVAA RPGGPPGLLR  720
LTVVNESEDF LSAVAAYVAA EAQRLDLSLQ FHPVLSSIEE LSATATGSIG SRLVVIPGQP  780
LAVVANLQIH RLLAFPDYVD GVASRRPAAE QSGSSQHTMT TATKTKADAL LRAIRDLNPK  840
LVVLTENEAD HNVAELGARV WNALNYYAAL FDALEASSTP PAAVPPHERA CVERWVLGEE  900
IKDIVVREGT GRRERHETLG RWAERMVAAG FSPVTAARAL ASTETLAQQM VAAGGGGAGA  960
GVLRAAHGGG CFPVICWCDV PVFSVSTWTA RRVLVPAPPL WPPAAAGGAG PSGSGYGGDG  1020
PSTASSSAAI SVAVMEKGSS STPSAANTSE PMLGQAAIAA TTAVPMTNFQ LFGSTVLVPV  1080
ASMATAIAPA AMAAADNGGH GSSSASQNAS AAMEKGSSST PSAANTSEPM VGQAAAATTT  1140
AAMRMTNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2561199153381Protein SCARECROW
5b3h_A2e-2561199152380Protein SCARECROW
5b3h_D2e-2561199152380Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209870.0AC120987.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0007A06, complete sequence.
GenBankAC1362180.0AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881539.10.0scarecrow-like protein 3
TrEMBLA0A0E0N4R90.0A0A0E0N4R9_ORYRU; Uncharacterized protein
STRINGORUFI01G40080.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170631012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-34scarecrow-like 3