PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G40220.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 203aa    MW: 21453.5 Da    PI: 5.042
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G40220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY54.22.9e-1718542258
                     EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
                      sYY+Cts++C++kk+ve+s++dp+++++tYeg+H+h
  ORUFI01G40220.1 18 WSYYKCTSSRCSAKKHVEKSTDDPEMLIVTYEGSHHH 54
                     69**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007747.9E-9356IPR003657WRKY domain
PfamPF031061.1E-121554IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-151655IPR003657WRKY domain
SuperFamilySSF1182901.01E-121856IPR003657WRKY domain
PROSITE profilePS5081115.7091957IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MEEDDGLALT AGANQSLWSY YKCTSSRCSA KKHVEKSTDD PEMLIVTYEG SHHHGPQPLF  60
PPHIAQPPPP TSVVGFSAAS GAGPPPSSPA AAARKRKNYV RAAFSPTTSE DDGDGAGRLR  120
PEWPQDDGTS CDVAELRRRG DAEHAAPRRV AMDRSCDDGG GGGSTSASSS VARADAATAL  180
SSDSPPTIWS CLDWPWSQET LFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032400.0AP003240.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0406G08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635485.11e-129WRKY transcription factor WRKY28
TrEMBLA0A0E0N4T51e-145A0A0E0N4T5_ORYRU; Uncharacterized protein
STRINGORUFI01G40220.11e-146(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131442633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.19e-13WRKY family protein