PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G41330.11

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 514aa MW: 57183 Da PI: 7.355

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G41330.11	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.6e-10	190	220	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k err+++NReAAr+sR+RKka++++Le+ ORUFI01G41330.11 190 AKTERRLAQNREAARKSRLRKKAYVQNLETS 220 799*************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-5	187	249	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	189	233	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-7	190	222	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-7	191	242	No hit	No description
SuperFamily	SSF57959	4.0E-7	191	237	No hit	No description
PROSITE pattern	PS00036	0	194	209	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.5E-29	285	359	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MSSVRYCLGR DFQPAAAAAA YFGELEEALI HGANAGGVVD PGMIRADVHS KSAAAAATAG 60 YLAARPPTLE IFPSWPMRQQ QQLHSGNSQS VGSTTDSSSA QNTMPQMELV SPASIRASSE 120 HQHQQQQPGQ EVMMVTTDDY SYKPGLAAAS PSFQQQHQLQ HHQQQQLHGG GDHDKRKHGS 180 TRKDGKSVDA KTERRLAQNR EAARKSRLRK KAYVQNLETS RVRLQQIEQE LQRARSQQQL 240 QPASLQLADE GVPRSSHHGA VKSFAGAAMF DMEYARWLDD DSKRLTDLRG GLQAHLLDTN 300 LGLIVEECMQ HYDELFQLKA ALARSDVFHL LTGTWATPAE RCFLWMGGFR PSDLLKILIQ 360 QLDPLTEQQM LGIYSLQQSS EQAEEALAQG LQQLHQSLAD TVAAGTLNDG PGVPNYMSLM 420 AIALDKLASL ESFYQQADNL RQQTLHQLRR ILTTRQAARC FLSIGEYYRR LRALSNLWSS 480 RPRENFIGTE SVSPTGTELQ PMHNQPQQNQ YSGF

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MSSVRYCLGR DFQPAAAAAA YFGELEEALI HGANAGGVVD PGMIRADVHS KSAAAAATAG  60
YLAARPPTLE IFPSWPMRQQ QQLHSGNSQS VGSTTDSSSA QNTMPQMELV SPASIRASSE  120
HQHQQQQPGQ EVMMVTTDDY SYKPGLAAAS PSFQQQHQLQ HHQQQQLHGG GDHDKRKHGS  180
TRKDGKSVDA KTERRLAQNR EAARKSRLRK KAYVQNLETS RVRLQQIEQE LQRARSQQQL  240
QPASLQLADE GVPRSSHHGA VKSFAGAAMF DMEYARWLDD DSKRLTDLRG GLQAHLLDTN  300
LGLIVEECMQ HYDELFQLKA ALARSDVFHL LTGTWATPAE RCFLWMGGFR PSDLLKILIQ  360
QLDPLTEQQM LGIYSLQQSS EQAEEALAQG LQQLHQSLAD TVAAGTLNDG PGVPNYMSLM  420
AIALDKLASL ESFYQQADNL RQQTLHQLRR ILTTRQAARC FLSIGEYYRR LRALSNLWSS  480
RPRENFIGTE SVSPTGTELQ PMHNQPQQNQ YSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101338	0.0	AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616930.1	0.0	transcription factor LG2 isoform X1
Refseq	XP_015616936.1	0.0	transcription factor LG2 isoform X1
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A0E0N5A7	0.0	A0A0E0N5A7_ORYRU; Uncharacterized protein
STRING	OGLUM01G42170.3	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-111	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]