PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G41330.7

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 498aa MW: 55452.2 Da PI: 7.2965

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G41330.7	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.5	8.9e-11	187	217	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k err+++NReAAr+sR+RKka++++Le+ ORUFI01G41330.7 187 AKTERRLAQNREAARKSRLRKKAYVQNLETS 217 799*************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-6	184	260	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	186	230	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.1E-8	187	218	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.51E-20	188	240	No hit	No description
SuperFamily	SSF57959	6.33E-7	188	231	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-7	188	232	No hit	No description
PROSITE pattern	PS00036	0	191	206	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.4E-29	269	343	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MSSVRYCLGR DFQPAAAAAA YFGELEEALI HGANAGGVVD PGMIRADVHS KSAATAGYLA 60 ARPPTLEIFP SWPMRQQQQL HSGNSQSVGS TTDSSSAQNT MPQMELVSPA SIRASSEHQH 120 QQQQPGQEVM MVTTDDYSYK PGLAAASPSF QQQHQLQHHQ QQQLHGGGDH DKRKHGSTRK 180 DGKSVDAKTE RRLAQNREAA RKSRLRKKAY VQNLETSRVR LQQIEQELQR ARSQGLFLGG 240 CRAAGDMSSG AAMFDMEYAR WLDDDSKRLT DLRGGLQAHL LDTNLGLIVE ECMQHYDELF 300 QLKAALARSD VFHLLTGTWA TPAERCFLWM GGFRPSDLLK ILIQQLDPLT EQQMLGIYSL 360 QQSSEQAEEA LAQGLQQLHQ SLADTVAAGT LNDGPGVPNY MSLMAIALDK LASLESFYQQ 420 ADNLRQQTLH QLRRILTTRQ AARCFLSIGE YYRRLRALSN LWSSRPRENF IGTESVSPTG 480 TELQPMHNQP QQNQYSGF

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MSSVRYCLGR DFQPAAAAAA YFGELEEALI HGANAGGVVD PGMIRADVHS KSAATAGYLA  60
ARPPTLEIFP SWPMRQQQQL HSGNSQSVGS TTDSSSAQNT MPQMELVSPA SIRASSEHQH  120
QQQQPGQEVM MVTTDDYSYK PGLAAASPSF QQQHQLQHHQ QQQLHGGGDH DKRKHGSTRK  180
DGKSVDAKTE RRLAQNREAA RKSRLRKKAY VQNLETSRVR LQQIEQELQR ARSQGLFLGG  240
CRAAGDMSSG AAMFDMEYAR WLDDDSKRLT DLRGGLQAHL LDTNLGLIVE ECMQHYDELF  300
QLKAALARSD VFHLLTGTWA TPAERCFLWM GGFRPSDLLK ILIQQLDPLT EQQMLGIYSL  360
QQSSEQAEEA LAQGLQQLHQ SLADTVAAGT LNDGPGVPNY MSLMAIALDK LASLESFYQQ  420
ADNLRQQTLH QLRRILTTRQ AARCFLSIGE YYRRLRALSN LWSSRPRENF IGTESVSPTG  480
TELQPMHNQP QQNQYSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101338	0.0	AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616943.1	0.0	transcription factor LG2 isoform X2
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A0E0N5B4	0.0	A0A0E0N5B4_ORYRU; Uncharacterized protein
STRING	OS01T0859500-01	0.0	(Oryza sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-131	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]