PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G43070.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 189aa    MW: 19839.1 Da    PI: 7.9777
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G43070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-161565155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr+++ +g+Wv+eIr+p +   r r +lg++ t+e Aa a++ a   l+g
  ORUFI01G43070.1 15 CRYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAVYFLRG 65
                     78*****777.**********943...5*********************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-91565IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-161667IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-241681IPR001471AP2/ERF domain
SMARTSM003807.2E-251686IPR001471AP2/ERF domain
PROSITE profilePS5103220.9291680IPR001471AP2/ERF domain
PRINTSPR003671.0E-81728IPR001471AP2/ERF domain
CDDcd000185.85E-132481No hitNo description
PRINTSPR003671.0E-83955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSRAECGGGE EEERCRYRGV RRRRWGKWVS EIRVPGTRER LWLGSYATPE AAAVAHDTAV  60
YFLRGGAGDG GGGGATLNFP ERAAATYGGA AAVARLSPRS VQRVASDAGM AADAQLVAAR  120
DAAPAPAPAT AYARPDHCAG ATTARHDELA RRGMYGAHAH AAGANARTSG ERQLVCAEEI  180
SVDDMEILM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1113801172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033460.0AP003346.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0434C04.
GenBankAP0033790.0AP003379.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0408G07.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645971.11e-130ethylene-responsive transcription factor ERF015
TrEMBLA0A0E0N5Z41e-130A0A0E0N5Z4_ORYRU; Uncharacterized protein
STRINGORUFI01G43070.11e-131(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.14e-21ERF family protein