PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G43970.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 692aa    MW: 71574 Da    PI: 7.0846
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G43970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.11.6e-11282338155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  ORUFI01G43970.1 282 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 338
                      57*******************4444.2455535555.779999**************98 PP
2AP246.77.9e-15381432155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  ORUFI01G43970.1 381 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 432
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-9282338IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-15282348IPR016177DNA-binding domain
CDDcd000184.23E-17282348No hitNo description
SMARTSM003809.2E-23283352IPR001471AP2/ERF domain
PROSITE profilePS5103217.385283346IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-12283347IPR001471AP2/ERF domain
PRINTSPR003673.6E-6284295IPR001471AP2/ERF domain
CDDcd000181.17E-22381442No hitNo description
PfamPF008479.8E-10381432IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17381442IPR016177DNA-binding domain
PROSITE profilePS5103219.045382440IPR001471AP2/ERF domain
SMARTSM003801.5E-33382446IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-18382441IPR001471AP2/ERF domain
PRINTSPR003673.6E-6422442IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MATMNNWLAF SLSPQDQLPP SQANSTLISA AATTTTGGDS SAGDVCFNIP QDWSMRGSEL  60
SALVAEPKLE DFLGGISFSE QQQHHHGAKG GAVGVIPSSA AAAAACYASS GSSVGYLYPP  120
PSSSSLQFAD SVMVATSSPV AHDGGMVSAA AAASGNGGIG LSMIKNWLRS QPAPQPAQAL  180
SLSMNMAGAT TAQGQGGGMA LLAGAGDQRG RTLAAESLST SAHGATTATM AGGRKEINEE  240
GSGSAGAVVA VGSESGGSGA VVEAGAAAAA RKSVDTFGQR TSIYRGVTRH RWTGRYEAHL  300
WDNSCRREGQ TRKGRQGGYD KEEKAARAYD LAALKYWGPT TTTNFPVNNY EKELEEMKHM  360
TRQEFVASLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA  420
EAYDIAAIKF RGLNAVTNFD MSRYDVKSIL DSAALPVGTA AKRIKDAEAA AAYDVGRIAS  480
HLGGDGAYAA HYGHHHHHTA AAAWPTIAFQ AAAAPPPHAA GLYHPYAQPL RGWCKQEQDH  540
AVIAAAHSLQ DLHHLNLGAA AAAHDFFSQA MQQQHGLGSI DNASLEHSTG SNSVVYNGDN  600
GGGGGGYIMA PMSAASATAT AVASSHDHGG DGGKQVQMGY DSYLVGADAY GGGAGRMPSW  660
AMTPASAPAA TSSSDMTGVC HGAQLFSVWN DT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408920.0AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634444.10.0AP2-like ethylene-responsive transcription factor PLT1
TrEMBLA0A0E0N6B40.0A0A0E0N6B4_ORYRU; Uncharacterized protein
STRINGORUFI01G43970.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-115AINTEGUMENTA-like 5