PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G44190.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 151aa    MW: 16364.9 Da    PI: 7.3058
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G44190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS28.91.4e-09109150334374
             GRAS 334 akqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      a++a+  l + + +dgy+v +e+ +lvlgWk++p++++S+W+
  ORUFI01G44190.1 109 AAKAREWLDENAgGDGYTVADEKVCLVLGWKGKPVIAASCWK 150
                      5677788888887****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035144.8E-7109150IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MRLAQLLVAC AEAVAPRQRC RPARRAFQRV ASFFVQELLD RRASAGAGPC EHGVLHPAVV  60
VREAYAEGLG MYLEFRGINR GLESLHIDDL GVDADEAVAI NSSVPIKMAA KAREWLDENA  120
GGDGYTVADE KVCLVLGWKG KPVIAASCWK C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037911e-142AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBankAP0067571e-142AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBankAP0149571e-142AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0N6E61e-105A0A0E0N6E6_ORYRU; Uncharacterized protein
STRINGORUFI01G44190.11e-106(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-07RGA-like 1