PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G00390.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 476aa    MW: 53073 Da    PI: 7.8989
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G00390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.21.9e-274392251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++g+ly ++s
  ORUFI02G00390.1 43 RIEDATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGRLYQFAS 92
                     8***********************************************86 PP
2K-box72.71.1e-24116207899
            K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      + ee+  ++++ e++ L k+ie ++  + +llGe+L+s+s++eLq+Le qLeksl +iR+kK+++l++qi el++ke +l +en+ Lr + +
  ORUFI02G00390.1 116 EGEESCVQKWRSEATTLGKKIEAIEGYKSKLLGEGLGSCSVQELQELEVQLEKSLCSIRQKKQKMLMDQILELREKEMNLLKENMVLRDQCK 207
                      3678889*********************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002653.55E-3525111No hitNo description
PROSITE profilePS5006629.7163494IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-353493IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-2936112IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003690IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-273656IPR002100Transcription factor, MADS-box
PfamPF003199.7E-264390IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-275671IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-277192IPR002100Transcription factor, MADS-box
PfamPF014861.6E-24119206IPR002487Transcription factor, K-box
PROSITE profilePS5129713.808122212IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MGGGGGVQHQ ETTTTVVQVA AEASRKKVEV RSAGRRGRRE MRRIEDATSR QVTFSKRRSG  60
LLKKAFELSV LCDAEVALIV FSPRGRLYQF ASASSDLQRT IDRYLNHTKN SSAHEEGEES  120
CVQKWRSEAT TLGKKIEAIE GYKSKLLGEG LGSCSVQELQ ELEVQLEKSL CSIRQKKQKM  180
LMDQILELRE KEMNLLKENM VLRDQCKALS SPWSTSVGEL KNKQADDDVH RHEDYSGGGV  240
RDDDDRRMME DVETDLAAAN QAGKVLKKGK KKQAKDELDR QKQAEKKRRR LEKALANSAA  300
IISELEKKKQ KKREEQQRLD EEGAAIAEAV ALHVLIGEDS DEPCHLMLNK HRRCNHWDHS  360
AGFDFAVDAQ GADIYPPDGL IQCADHVYAP KGRCIDWGIG QPLPSWGEVK DLQLQAPCYQ  420
GMFHQSVACP GFIAAQAVSS LQIGGDSSDI TSPSQGATVV NRMLGATNRL NLYREI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-1636115377Myocyte-specific enhancer factor 2B
1tqe_Q3e-1636115377Myocyte-specific enhancer factor 2B
1tqe_R3e-1636115377Myocyte-specific enhancer factor 2B
1tqe_S3e-1636115377Myocyte-specific enhancer factor 2B
6c9l_A3e-1636115377Myocyte-specific enhancer factor 2B
6c9l_B3e-1636115377Myocyte-specific enhancer factor 2B
6c9l_C3e-1636115377Myocyte-specific enhancer factor 2B
6c9l_D3e-1636115377Myocyte-specific enhancer factor 2B
6c9l_E3e-1636115377Myocyte-specific enhancer factor 2B
6c9l_F3e-1636115377Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269289KKKQAKDELDRQKQAEKKRRR
2286290KRRRL
3287310RRRLEKALANSAAIISELEKKKQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218240.0AK121824.1 Oryza sativa Japonica Group cDNA clone:J033099F22, full insert sequence.
GenBankAP0040490.0AP004049.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1212_C06.
GenBankAP0067200.0AP006720.1 Oryza sativa Japonica Group genomic DNA, chromosome 2, clone:OJA1212_C06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625202.10.0MADS-box protein SOC1 isoform X1
TrEMBLA0A0E0N8J50.0A0A0E0N8J5_ORYRU; Uncharacterized protein
STRINGORUFI02G00390.20.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.14e-48AGAMOUS-like 20