PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI02G07490.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 317aa MW: 33534.4 Da PI: 4.6858

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI02G07490.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	231.9	2.8e-71	39	314	109	374
GRAS 109 eerv.HiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vakrledleleeL 194 ++rv Hi+D+d+ +G+QWp+Llqa+a+R+ ++pp++R+Tg g +++ l +tg+rL+ f ++l++pf+f++l + +l++ + +L ORUFI02G07490.1 39 HRRVlHIVDLDAAHGVQWPPLLQAIADRAdpavGPPPEVRLTGAGT----DRDVLLRTGDRLRAFSSSLNLPFRFHPLilpCTAELAADPTAAL 128 44444**********************88888899*****....*************************554445666668899 PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse........sFlerflealeyysalfdsleaklprese 280 +++p+E+laVn+vl lh+l +++l+ +L+ vks++P vv+++e+e +++ ++ +r++ a++yys++fd+lea++p++s ORUFI02G07490.1 129 ELHPDETLAVNCVLFLHKLG-GDGELAA----FLRWVKSMNPAVVTIAEREGVLGGDvdddnvpdELPRRVAAAMDYYSSVFDALEATVPPASA 217 *****************8.5666666....***************888655577788999************************ PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdrpLvsvS 371 +r vE+e+l+rei +va+ ga r + + W ++ ++aG+ p pls +aa+qa+lllr ++ s+gy+ +++ +g+ +l W++rpL+svS ORUFI02G07490.1 218 DRLAVEQEILSREIDAAVAAPGAGGGGRARDFDAWASAARAAGLAPRPLSAFAASQARLLLRLHYpSEGYKADDDggRGACFLRWQQRPLMSVS 311 *********************************************************************996667788******** PP GRAS 372 aWr 374 +W+ ORUFI02G07490.1 312 SWQ 314 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.818	1	291	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.7E-69	39	314	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MLGSSPARDR GGGDDAEASE QPQPQPQPXA AAADAGGAHR RVLHIVDLDA AHGVQWPPLL 60 QAIADRADPA VGPPPEVRLT GAGTDRDVLL RTGDRLRAFS SSLNLPFRFH PLILPCTAEL 120 AADPTAALEL HPDETLAVNC VLFLHKLGGD GELAAFLRWV KSMNPAVVTI AEREGVLGGD 180 VDDDNVPDEL PRRVAAAMDY YSSVFDALEA TVPPASADRL AVEQEILSRE IDAAVAAPGA 240 GGGGRARDFD AWASAARAAG LAPRPLSAFA ASQARLLLRL HYPSEGYKAD DDGGRGACFL 300 RWQQRPLMSV SSWQPQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-36	43	316	130	381	Protein SCARECROW
5b3h_A	3e-36	43	316	129	380	Protein SCARECROW
5b3h_D	3e-36	43	316	129	380	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269\|PubMed:12687001}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004191	0.0	AP004191.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1524_D08.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624347.2	0.0	protein MONOCULM 1-like
Refseq	XP_025879052.1	0.0	protein MONOCULM 1-like
Swissprot	Q84MM9	1e-108	MOC_ORYSJ; Protein MONOCULM 1
TrEMBL	A0A0E0NB75	0.0	A0A0E0NB75_ORYRU; Uncharacterized protein
STRING	ORUFI02G07490.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-53	GRAS family protein

Publications ? help Back to Top
Li X, et al. Control of tillering in rice. Nature, 2003. 422(6932): p. 618-21 [PMID:12687001] Sun F, et al. Identification and functional analysis of the MOC1 interacting protein 1. J Genet Genomics, 2010. 37(1): p. 69-77 [PMID:20171579] Sanyal A, et al. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Mol. Biol. Evol., 2010. 27(11): p. 2487-506 [PMID:20522726] Yan WH, et al. A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant, 2011. 4(2): p. 319-30 [PMID:21148627] Xu C, et al. Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering. Nat Commun, 2012. 3: p. 750 [PMID:22434193] Lin Q, et al. Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1. Nat Commun, 2012. 3: p. 752 [PMID:22434195] Liang WH,Shang F,Lin QT,Lou C,Zhang J Tillering and panicle branching genes in rice. Gene, 2014. 537(1): p. 1-5 [PMID:24345551] Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]