PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI02G12830.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GeBP

Protein Properties

Length: 576aa MW: 61262 Da PI: 6.2074

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI02G12830.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	42.9	1.3e-13	201	290	7	98
DUF573 7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 w+ +De+ +L l+ +++g++ ++++++ v +s++ k k s++ eK+rrLK++++ kk+++g + +ke+d +++ls+ iWg+ ORUFI02G12830.1 201 WTTDDEVKILEVLVAHFKSHGTQ--LNVEGIIAAVGDSLERKSIKySDMYEKVRRLKQRYEATAKKVEHGGDLP-AKEDDLRMYQLSSEIWGK 290 ************999999954..699*******98865538*******************9965.567889********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.1E-19	201	289	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence Send to blast
MARKRRAPTP PPPPPPPPEA ESSADSSGEE EEEEEEERES PVAPPPQKPS GRGAASSDEE 60 EEEEEEDSDT DTYAQCFQLR KVGGGDEEGE EVEGDSSESE PEPEPVKKES AKKAKAEAKK 120 KRAAPEPAPS GKAKKAKPEK SSSAAAPEPA PSLGKSKKAA KAEAAKAAAA EPAPSTGKVS 180 KSKLAPEPSP SSKSGKALSR WTTDDEVKIL EVLVAHFKSH GTQLNVEGII AAVGDSLERK 240 SIKYSDMYEK VRRLKQRYEA TAKKVEHGGD LPAKEDDLRM YQLSSEIWGK NAKDAGNSSK 300 NKKGQAKKDK VSGDSKEAAK EDKVDEAAIA VNEKGGTLAE NKKGKTNKQK TGMETKVGSS 360 KEAALAASPT KGKKKGSHKD KLDEEAKSGT AKVTSTIATD DDDGTLGGSK REKAGKEELD 420 GDTHIVMPKE ATTTAASDDG TLVGSKKGKA DNGKLDGDTH SVMPKEATAG TQNGGILTGG 480 ENHKEKVDKD ANVPSIRREY AELQSLYPNL ASFVNGIEAQ HPCGSTFKRA FEFISDDKAC 540 TLESKIKKQK IAEVRMQLRL ADTKKEVANA LLGLLD

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence Send to blast

MARKRRAPTP PPPPPPPPEA ESSADSSGEE EEEEEEERES PVAPPPQKPS GRGAASSDEE  60
EEEEEEDSDT DTYAQCFQLR KVGGGDEEGE EVEGDSSESE PEPEPVKKES AKKAKAEAKK  120
KRAAPEPAPS GKAKKAKPEK SSSAAAPEPA PSLGKSKKAA KAEAAKAAAA EPAPSTGKVS  180
KSKLAPEPSP SSKSGKALSR WTTDDEVKIL EVLVAHFKSH GTQLNVEGII AAVGDSLERK  240
SIKYSDMYEK VRRLKQRYEA TAKKVEHGGD LPAKEDDLRM YQLSSEIWGK NAKDAGNSSK  300
NKKGQAKKDK VSGDSKEAAK EDKVDEAAIA VNEKGGTLAE NKKGKTNKQK TGMETKVGSS  360
KEAALAASPT KGKKKGSHKD KLDEEAKSGT AKVTSTIATD DDDGTLGGSK REKAGKEELD  420
GDTHIVMPKE ATTTAASDDG TLVGSKKGKA DNGKLDGDTH SVMPKEATAG TQNGGILTGG  480
ENHKEKVDKD ANVPSIRREY AELQSLYPNL ASFVNGIEAQ HPCGSTFKRA FEFISDDKAC  540
TLESKIKKQK IAEVRMQLRL ADTKKEVANA LLGLLD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626761.1	0.0	neurofilament medium polypeptide
TrEMBL	A0A0E0ND82	0.0	A0A0E0ND82_ORYRU; Uncharacterized protein
STRING	ORUFI02G12830.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7289	27	37